View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_high_2 (Length: 524)

Name: NF12723_high_2
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_high_2
NF12723_high_2
[»] chr2 (3 HSPs)
chr2 (11-510)||(39090587-39091084)
chr2 (165-210)||(39068709-39068754)
chr2 (157-222)||(44488003-44488068)
[»] chr5 (5 HSPs)
chr5 (265-395)||(2376112-2376240)
chr5 (167-215)||(16752505-16752553)
chr5 (167-205)||(29554882-29554920)
chr5 (165-206)||(22901978-22902019)
chr5 (167-203)||(6237722-6237758)
[»] chr3 (2 HSPs)
chr3 (167-209)||(47039443-47039485)
chr3 (165-206)||(52119395-52119436)
[»] chr1 (4 HSPs)
chr1 (165-210)||(19262908-19262953)
chr1 (167-210)||(5031157-5031200)
chr1 (167-206)||(12500942-12500981)
chr1 (165-210)||(26329123-26329168)
[»] chr7 (3 HSPs)
chr7 (167-210)||(42336085-42336128)
chr7 (165-210)||(39926539-39926584)
chr7 (165-210)||(45200208-45200253)
[»] chr8 (6 HSPs)
chr8 (165-206)||(9635054-9635095)
chr8 (165-206)||(20275190-20275231)
chr8 (165-206)||(21061817-21061858)
chr8 (165-214)||(23159452-23159501)
chr8 (182-214)||(33763826-33763858)
chr8 (170-202)||(35700401-35700433)
[»] chr4 (2 HSPs)
chr4 (182-214)||(29910472-29910504)
chr4 (182-214)||(49952689-49952721)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 39091084 - 39090587
Alignment:
Q  11 catagggcaccatcaacgctatggattctagccatatatgatcatttgaggaagtattctttccatatttaccgtctaacctttgagtttgttcaaaata 110  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39091084 catagagcaccatcaacgctatggattctagccatacatgatcatttgaggaagtattctttccatatttactgtctaacctttgagtttgttcaaaata 39090985  T
Q  111 atgttattctcattttgtataattgatcattaacatgnnnnnnnnngtggatgtggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||| ||||  |||||||||||||||||||         ||||||| |||||||| |||||| ||||||| |||||||||||||| |||||||    
T  39090984 atgttattctcgtttttcataattgatcattaacatgttttttt--gtggatggggttcgaatcccgaactttgcatatattatgcattgtctttatcaa 39090887  T
Q  211 ttgaagtaaactatcattcacattcttaggtgcagaaagtagaagaaactagacacaaggaaaaatgcacattggaggaagaaataaagacgcatcataa 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090886 ttgaagtaaactatcattcacattcttaggtgtagaaagtagaagaaactagacacaaggaaaaatgcacattggaggaagaaataaagacgcatcataa 39090787  T
Q  311 ctttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatatatgtaataacacctttctcaactatttgcagtcgaatctaaagatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090786 ctttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatatatgtaataacacctttctcaactatttgcagtcgaatctaaagatt 39090687  T
Q  411 attccttcaacaacaaaggataagtagaaatcccgttttgcaccctcttgttttccaataaataatgtattacttaattatctaatttcataaattaatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39090686 attccttcaacaacaaaggataagtagaaatcccgttttgcaccctcttgttttccaataaataatgtattacttaattatctaatttcacaaattaatg 39090587  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 39068709 - 39068754
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||| ||||||| || |||||| ||||||||||||||||||||||    
T  39068709 ggttcaaaccccggatcttgcatatattatgcattgtccttatcaa 39068754  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 44488003 - 44488068
Alignment:
Q  157 gtggatgtggttcgaaccccgaattttgcatgtattatgcattgtccttatcaattgaagtaaact 222  Q
    |||||||||||| |||| |||||  || ||| |||||||||||||||||| ||| |||| ||||||    
T  44488003 gtggatgtggtttgaactccgaaccttacatatattatgcattgtccttaccaactgaactaaact 44488068  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 395
Target Start/End: Original strand, 2376112 - 2376240
Alignment:
Q  265 acaaggaaaaatgcacattggaggaagaaataaagacgcatcataactttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatat 364  Q
    ||||||||||||||||| | ||||| |||||||| | | ||| |||||||||||||| ||||||   |||||||| |||| | |||| ||||||||| ||    
T  2376112 acaaggaaaaatgcacaattgaggatgaaataaaaaggtatcctaactttttcaatttgttcttcagtggccaaaattttgt-tggttcttcaagcacat 2376210  T
Q  365 atgtaataacacctttctcaactatttgcag 395  Q
    | |  ||||||| |||||| |||||||||||    
T  2376211 acg-cataacacatttctctactatttgcag 2376240  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 16752505 - 16752553
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaattgaa 215  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| ||||    
T  16752505 ttcgaaccccgaatcttgcatatattatgcattgtccttaccaactgaa 16752553  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 29554920 - 29554882
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcctt 205  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  29554920 ttcgaaccccgaaccttgcatgtattatgcattgtcctt 29554882  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 22902019 - 22901978
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||| |||||| ||||||| ||||||||||||||||||    
T  22902019 ggttcgaatcccgaactttgcatatattatgcattgtcctta 22901978  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 6237722 - 6237758
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcc 203  Q
    |||||||||||||| |||||| |||||||||||||||    
T  6237722 ttcgaaccccgaatcttgcatatattatgcattgtcc 6237758  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 47039485 - 47039443
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatca 209  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  47039485 ttcgaaccccgaactttgcatatattatgcattgtccttatca 47039443  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 52119436 - 52119395
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||||||||||  |||||| ||||||||||||||||||    
T  52119436 ggttcgaaccccgaaccttgcatatattatgcattgtcctta 52119395  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 19262908 - 19262953
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  19262908 ggttcgaaccccgaactttgcatatgttatgcattgtccttatcaa 19262953  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 5031157 - 5031200
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||||| |||| || ||||||||||||||||||||||    
T  5031157 ttcgaaccccgaactttgtatatattatgcattgtccttatcaa 5031200  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 12500981 - 12500942
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  12500981 ttcgaaccccgaactttgcatatattatgcattgtcctta 12500942  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 26329123 - 26329168
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||| |||||  |||||||||||||||||||| ||||||||    
T  26329123 ggttcgaactccgaaccttgcatgtattatgcattgttcttatcaa 26329168  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 42336128 - 42336085
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||| |  |||||||||||||||||||||||||||||    
T  42336128 ttcgaaccccggaccttgcatgtattatgcattgtccttatcaa 42336085  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 39926539 - 39926584
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||    
T  39926539 ggtttgaaccccgaacattgcatatattatgcattgtccttatcaa 39926584  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 45200253 - 45200208
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||| ||  ||||||||||||||||||||||||| ||||||    
T  45200253 ggttcgaactccagattttgcatgtattatgcattgtccatatcaa 45200208  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 9635054 - 9635095
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  9635054 ggttcgaaccccgaaccttgcatgtattatgcattatcctta 9635095  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 20275190 - 20275231
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  20275190 ggtttgaaccccgaaccttgcatgtattatgcattgtcctta 20275231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 21061817 - 21061858
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  21061817 ggtttgaaccccgaaccttgcatgtattatgcattgtcctta 21061858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 23159501 - 23159452
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaattga 214  Q
    |||| ||||||||||| |||||| ||||||||||||||| ||| ||||||    
T  23159501 ggtttgaaccccgaatcttgcatatattatgcattgtccatatgaattga 23159452  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 33763858 - 33763826
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  33763858 ttgcatatattatgcattgtccttatcaattga 33763826  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 35700401 - 35700433
Alignment:
Q  170 gaaccccgaattttgcatgtattatgcattgtc 202  Q
    |||||||||||||||||| ||||||||||||||    
T  35700401 gaaccccgaattttgcatatattatgcattgtc 35700433  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 29910504 - 29910472
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  29910504 ttgcatatattatgcattgtccttatcaattga 29910472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 49952689 - 49952721
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  49952689 ttgcatatattatgcattgtccttatcaattga 49952721  T

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