View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_high_21 (Length: 239)
Name: NF12723_high_21
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15636507 - 15636731
Alignment:
| Q |
1 |
tgtaaacgtgggagtgatttcagttgcnnnnnnnattttatacaaaatcaataagaataaaaaataaaatataagagagcgtgcgtgactttttgacact |
100 |
Q |
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| T |
15636507 |
tgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaataagaataaaaaataaaatataagagagtgtgcgtgacttttttacact |
15636606 |
T |
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| Q |
101 |
aagcacgtgagtcgtgcattgtcgtgtgtttgaaatagcaatactcatagatagataataacaaaggaggttatgaattcaataggataacataacatat |
200 |
Q |
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| T |
15636607 |
aagcacgtgagtcgtgcattgtcgtgcgtttgaaatagcaatactcatagatagataataacaaaggaggttaggaattcaataggataacataacatat |
15636706 |
T |
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| Q |
201 |
caaataagggttacaaaacattttg |
225 |
Q |
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| T |
15636707 |
caaataagggttacaaaacattttg |
15636731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 15587011 - 15587072
Alignment:
| Q |
157 |
aataacaaaggaggttatgaattcaataggataacataacatatcaaataagggttacaaaa |
218 |
Q |
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| T |
15587011 |
aataacaaaagagggtatgaattcattaggataacataacatatcaaataagggttacaaaa |
15587072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 53325849 - 53325979
Alignment:
| Q |
1 |
tgtaaacgtgggagtgatttcagttgcnnnnnnnattttatacaaaatcaataagaataaaaaataaaatataagagagcgtgcgtgactttttgacact |
100 |
Q |
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| T |
53325849 |
tgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaatgagaatataaagtaaaata----agagtgtgcgtgactttgt-acact |
53325943 |
T |
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| Q |
101 |
aagcacgtgagtcgtgcattgtcgtgtgtttgaaat |
136 |
Q |
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| T |
53325944 |
aagcacgtgagtcgtgcattgtcgtgcgtttgaaat |
53325979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 14121997 - 14121869
Alignment:
| Q |
4 |
aaacgtgggagtgatttcagttgcnnnnnnnattttatacaaaatcaataagaataaaaaataaaatataagagagcgtgcgtgactttttgacactaag |
103 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||| |||| || |
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| T |
14121997 |
aaacatgggagtgatttcagttgctttttttattttatacaaaataaataataataaaaaataaa--ataagagagtgtgcgtgactttt--ccactgag |
14121902 |
T |
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| Q |
104 |
cacgtgagtcgtgcattgtcgtgtgtttgaaat |
136 |
Q |
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| T |
14121901 |
cacgtgagtcgtgtattgtcgtgcgttttaaat |
14121869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 20008404 - 20008501
Alignment:
| Q |
35 |
attttatacaaaatcaataagaataaaaaataaaatataagagagcgtgcgtgactttttgacactaagcacgtgagtcgtgcattgtcgtgtgtttgaa |
134 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||| |||| || |
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| T |
20008404 |
attttatacaaaataaataagaataaaaaataaa--ataagagagtgtgcgtgactttt--ccactgagcacgtgagtcgtgtattgtcgtgcgttttaa |
20008499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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