View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_high_22 (Length: 236)
Name: NF12723_high_22
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 7242303 - 7242079
Alignment:
| Q |
12 |
agcacagaaaagacaccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttcagacgt |
111 |
Q |
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| T |
7242303 |
agcacagaaaagacaccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttcagacgt |
7242204 |
T |
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| Q |
112 |
tccacttttaccatatgctaaatggtttttcatttcagggcatatcagcaaggttctgtattggcttcagcttctttctgcaacagcttgcgtggttctg |
211 |
Q |
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| T |
7242203 |
tccacttttaccatatgctaaatggtttttcatttcagggcatatcagcaaggttctgtattggcttcagcttctttctgcaacagcttgcgtggttctg |
7242104 |
T |
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| Q |
212 |
tcttcgacaaagctcatcaggcata |
236 |
Q |
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| T |
7242103 |
tcttcgacaaagctcatcaggcata |
7242079 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 48730825 - 48730960
Alignment:
| Q |
75 |
caaggacaacgactaggacgtggattagttcagacgttccacttttaccatatgctaaatggtttttcatttcagggcatatcagcaaggttctgtattg |
174 |
Q |
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| T |
48730825 |
caaggacaccaactaggatgtgggttagctcagaagttccattattaccttatgctaaatggttttttcttttaaggcatgtaagtagaattctctattg |
48730924 |
T |
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| Q |
175 |
gcttcagcttctttctgcaacagcttgcgtggttct |
210 |
Q |
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| T |
48730925 |
gcttcaacttatttctgcaacagctagtgtggttct |
48730960 |
T |
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