View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_high_3 (Length: 508)
Name: NF12723_high_3
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Original strand, 47406615 - 47407102
Alignment:
| Q |
17 |
aacatcatacaacaactaatt-gattaatatcaggtaatgaaccaattattttggcataaaatgaattaatagattcattaaagccaattaatcgattat |
115 |
Q |
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| T |
47406615 |
aacatcatacaacaactaatttgattaatatcaggtaatgaaccaattattttggcataaaatgaattaatagattcattaaagccaattaatcgattat |
47406714 |
T |
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| Q |
116 |
tatgacagaatataggcaaaatgtacaaaagttgaaggtttcggttacttaatctagtattgaattactaaaaatacaaaattaaggttcgttacattct |
215 |
Q |
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| T |
47406715 |
tatgacagaatataggcaaaatgtacaaaagttgaaggtttcggttacttaatccagtattgaattactaaaaatacaaaattaaggttcgttacattct |
47406814 |
T |
|
| Q |
216 |
acctctcttaaaataattc-atcctcgaaattcaattgaagactggacaaataaacagctgaatttcaatttgaattagaaatgaagtttacgaatcatt |
314 |
Q |
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| T |
47406815 |
acctctcttaaaataattccatcctcgaaattcaattgaacactggacaaataaacagctgaatttcaatttgaattagaaatgaagtttacgaatcatt |
47406914 |
T |
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| Q |
315 |
aagaattggattcagttttggcataaatggaaatatgacttgcattactaactcaagttcaggcataaaggtaacttggggtttacaatggagcacccca |
414 |
Q |
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| T |
47406915 |
aagaattggattcagttttggcacaaatggaaatatgactgatattactaactcaagttcaggcataaaggtaacttggggtttacaagggagcacccca |
47407014 |
T |
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| Q |
415 |
gtcggaaaccaaaataacaacacgtccatgaaataaagcaaaacatcaaaacagtatgagcttgggccctaatctaactctctgctcc |
502 |
Q |
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| T |
47407015 |
gtcggaaaccaaaataacaacacgtccatgaaataaagcaaaacatcaaaacagtatgagcttgggccctaatctaactgtctgctcc |
47407102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 47417498 - 47417608
Alignment:
| Q |
185 |
aaaaatacaaaattaaggttcgttacattctacctctcttaaaataatt-catcctcgaaattcaattgaagac---tggacaaataaacagctgaattt |
280 |
Q |
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||||| ||||||||| || ||||||||| ||| ||||||||| |||| | |||| |||||||||||||||| ||||| |||||||||| |||||| |
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| T |
47417498 |
aaaaagacaaaattatgggccgttacattttactcctcttaaaacaatttcgtcctagaaattcaattgaagatcattggacgaataaacagcagaattt |
47417597 |
T |
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| Q |
281 |
caatttgaatt |
291 |
Q |
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| T |
47417598 |
caatttgaatt |
47417608 |
T |
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