View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_high_5 (Length: 431)

Name: NF12723_high_5
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_high_5
NF12723_high_5
[»] chr7 (21 HSPs)
chr7 (1-384)||(44962967-44963372)
chr7 (74-327)||(28124705-28124962)
chr7 (74-301)||(4895468-4895698)
chr7 (74-243)||(28126532-28126703)
chr7 (75-243)||(20046614-20046785)
chr7 (75-189)||(37405568-37405682)
chr7 (153-247)||(44962224-44962318)
chr7 (1-79)||(20046517-20046595)
chr7 (2-79)||(28014296-28014373)
chr7 (2-77)||(8405640-8405715)
chr7 (200-301)||(6323957-6324058)
chr7 (2-79)||(25471794-25471871)
chr7 (2-55)||(4895739-4895792)
chr7 (2-55)||(28124610-28124663)
chr7 (2-55)||(28126437-28126490)
chr7 (77-139)||(36989570-36989632)
chr7 (241-292)||(21631461-21631513)
chr7 (211-245)||(36989612-36989646)
chr7 (127-180)||(21631159-21631212)
chr7 (127-180)||(21633120-21633173)
chr7 (141-189)||(25471955-25472003)
[»] chr4 (19 HSPs)
chr4 (1-287)||(23564697-23565006)
chr4 (1-243)||(7040306-7040570)
chr4 (74-327)||(52520458-52520715)
chr4 (1-243)||(23566391-23566626)
chr4 (1-232)||(18656064-18656317)
chr4 (74-243)||(52518702-52518873)
chr4 (75-189)||(23985773-23985887)
chr4 (73-189)||(3529263-3529379)
chr4 (74-162)||(54296454-54296542)
chr4 (97-243)||(3274580-3274726)
chr4 (89-189)||(52545234-52545333)
chr4 (89-189)||(24807423-24807522)
chr4 (13-79)||(56074680-56074746)
chr4 (241-301)||(18807593-18807655)
chr4 (2-55)||(52518915-52518968)
chr4 (2-55)||(52520757-52520810)
chr4 (13-73)||(52545137-52545197)
chr4 (139-189)||(18395816-18395866)
chr4 (21-67)||(54296571-54296617)
[»] chr8 (17 HSPs)
chr8 (1-243)||(30224175-30224439)
chr8 (73-245)||(3375539-3375711)
chr8 (74-245)||(31032120-31032287)
chr8 (1-243)||(5567371-5567635)
chr8 (74-231)||(6428699-6428854)
chr8 (1-243)||(25248957-25249215)
chr8 (74-209)||(3379231-3379366)
chr8 (1-160)||(36535873-36536035)
chr8 (1-72)||(6428879-6428950)
chr8 (127-189)||(14935576-14935638)
chr8 (13-73)||(31032038-31032098)
chr8 (192-243)||(5567676-5567727)
chr8 (1-55)||(3375456-3375510)
chr8 (13-73)||(19473668-19473728)
chr8 (13-73)||(19544593-19544653)
chr8 (13-73)||(19588043-19588103)
chr8 (13-73)||(3379149-3379209)
[»] chr2 (10 HSPs)
chr2 (1-243)||(29758065-29758329)
chr2 (177-245)||(8759203-8759271)
chr2 (73-234)||(20516060-20516227)
chr2 (237-364)||(18776617-18776746)
chr2 (30-78)||(8759115-8759163)
chr2 (188-238)||(31155713-31155763)
chr2 (249-301)||(25306655-25306708)
chr2 (13-79)||(18612074-18612140)
chr2 (241-292)||(17308534-17308586)
chr2 (129-189)||(18739671-18739730)
[»] chr6 (26 HSPs)
chr6 (1-287)||(19645322-19645631)
chr6 (1-301)||(5378616-5378942)
chr6 (92-246)||(15149180-15149334)
chr6 (1-243)||(5376820-5377087)
chr6 (1-219)||(1088675-1088915)
chr6 (73-189)||(15868391-15868507)
chr6 (75-189)||(33866098-33866212)
chr6 (75-189)||(33869245-33869359)
chr6 (73-189)||(15866579-15866695)
chr6 (175-272)||(9414935-9415032)
chr6 (80-161)||(9415095-9415176)
chr6 (188-264)||(9415031-9415107)
chr6 (89-189)||(14611083-14611182)
chr6 (118-189)||(32079909-32079980)
chr6 (2-79)||(8915599-8915676)
chr6 (11-72)||(24544757-24544818)
chr6 (2-73)||(9415205-9415276)
chr6 (241-301)||(33869174-33869235)
chr6 (241-301)||(15868320-15868381)
chr6 (73-189)||(28884370-28884487)
chr6 (129-189)||(14620510-14620570)
chr6 (49-79)||(15149108-15149138)
chr6 (205-243)||(30376227-30376265)
chr6 (241-301)||(14620439-14620500)
chr6 (2-79)||(20985831-20985908)
chr6 (89-137)||(14618975-14619022)
[»] chr1 (18 HSPs)
chr1 (1-246)||(17449253-17449519)
chr1 (74-243)||(16808696-16808867)
chr1 (73-189)||(9312028-9312144)
chr1 (75-189)||(3282800-3282914)
chr1 (75-189)||(3284501-3284615)
chr1 (73-189)||(9310411-9310527)
chr1 (138-243)||(48940621-48940726)
chr1 (97-189)||(37664695-37664787)
chr1 (97-189)||(37674417-37674509)
chr1 (97-189)||(37702185-37702277)
chr1 (89-189)||(902076-902175)
chr1 (75-142)||(48941646-48941713)
chr1 (129-189)||(5924946-5925006)
chr1 (4-67)||(48941747-48941810)
chr1 (241-301)||(3284430-3284491)
chr1 (2-55)||(16808601-16808654)
chr1 (206-243)||(51020572-51020609)
chr1 (21-73)||(5924828-5924880)
[»] chr3 (8 HSPs)
chr3 (1-243)||(17402804-17403071)
chr3 (1-245)||(1139956-1140210)
chr3 (1-243)||(6789565-6789829)
chr3 (89-189)||(20302625-20302725)
chr3 (97-189)||(20327167-20327259)
chr3 (13-55)||(20302783-20302825)
chr3 (241-301)||(4608927-4608988)
chr3 (89-146)||(41874441-41874497)
[»] scaffold0251 (2 HSPs)
scaffold0251 (75-189)||(6225-6339)
scaffold0251 (241-297)||(6158-6215)
[»] chr5 (7 HSPs)
chr5 (75-189)||(39787177-39787291)
chr5 (241-309)||(4895939-4896010)
chr5 (15-73)||(20012959-20013017)
chr5 (89-133)||(6569888-6569932)
chr5 (250-301)||(33689796-33689848)
chr5 (241-301)||(25502243-25502305)
chr5 (241-301)||(10412181-10412242)
[»] scaffold0057 (2 HSPs)
scaffold0057 (74-189)||(58785-58900)
scaffold0057 (13-73)||(58922-58982)
[»] scaffold0006 (2 HSPs)
scaffold0006 (89-189)||(39144-39243)
scaffold0006 (13-79)||(39275-39341)
[»] scaffold0311 (1 HSPs)
scaffold0311 (259-362)||(14914-15018)
[»] scaffold0189 (1 HSPs)
scaffold0189 (2-73)||(19082-19153)
[»] scaffold0245 (1 HSPs)
scaffold0245 (253-301)||(11027-11076)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 44963372 - 44962967
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||                         
T  44963372 gtcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagattgataaaagatgatgaa 44963273  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44963272 tgagtacaatagtgttcctatatatagagattaatttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 44963173  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattcaca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44963172 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattcaca 44963073  T
Q  279 atttgagttcgaaatacaatgaattacaattgaaatttgcatactataaggacgaagtaaaacataaggtgtaaactagtaaaagacaagaaaatgatga 378  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44963072 atttgagtttgaaatacaatgaattacaattgaaatttgcatactataaggacgaagtaaaacataaggtgtaaactagtaaaagacaagaaactgatga 44962973  T
Q  379 aatgga 384  Q
    ||||||    
T  44962972 aatgga 44962967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 74 - 327
Target Start/End: Original strand, 28124705 - 28124962
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  28124705 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 28124804  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaa 271  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||    
T  28124805 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatggggaa 28124904  T
Q  272 attca-caatttgagttcgaaatacaatg-aattacaattgaaatttgcatactataa 327  Q
    ||||| ||||||||| | | ||||||||| || |||||||| |||||  |||||||||    
T  28124905 attcaccaatttgagcttggaatacaatgaaagtacaattggaatttatatactataa 28124962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 301
Target Start/End: Complemental strand, 4895698 - 4895468
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  4895698 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaaataactctaactaacttctaaccaaactactaactctagtttacttatcaac 4895599  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaa 271  Q
    |||||||||||||||||  | |||| | |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||    
T  4895598 taactatagttgattacaattactctaatctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatggggaa 4895499  T
Q  272 attca-caatttgagttcgaaatacaatgaa 301  Q
    | ||| ||||||||| | | |||||||||||    
T  4895498 aatcaccaatttgagcttggaatacaatgaa 4895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 28126532 - 28126703
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  28126532 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 28126631  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  28126632 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaa 28126703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 20046614 - 20046785
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  20046614 tgaatgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 20046713  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  20046714 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaa 20046785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 37405568 - 37405682
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  37405568 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttatctatcaact 37405667  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  37405668 aactatagttgatta 37405682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 44962318 - 44962224
Alignment:
Q  153 aaccctagtttacttatcaactaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagc 247  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  44962318 aaccctagtttacttatcaactaactatagttgattactcactcaagtctaactaccttaactaacttcacataacttccaactatgttaatagc 44962224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20046517 - 20046595
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  20046517 gtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaat 20046595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 28014296 - 28014373
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    |||||||||||||||||||||||| |||||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  28014296 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaat 28014373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 8405715 - 8405640
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatga 77  Q
    ||||| |||||||||| ||||||| |||||||||||||||| |||||||| ||  |||||||||||||||||||||    
T  8405715 tcatatatgtaagcaaaatagcaagcataagagtattcatgggggagataatcgtagaaactcattgtagaaatga 8405640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 6324058 - 6323957
Alignment:
Q  200 tctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattcacaatttgagttcgaaatacaatg 299  Q
    |||||||| || ||||||||||||||||||| | ||||| |||| |  || |||||||||||||||||| |||| ||| |||||||||   |||||||||    
T  6324058 tctaactatctaaactaactccacataactttctactattttaacaatctacctcaaactcaaaatggggaaatccactatttgagtttcgaatacaatg 6323959  T
Q  300 aa 301  Q
    ||    
T  6323958 aa 6323957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 25471794 - 25471871
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    ||||||||||||| |||||||||| ||||||| |||||| | |||||||||| | ||||||||||| || ||||||||    
T  25471794 tcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcattatataaatgaat 25471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 4895792 - 4895739
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||||||| |||||||||||||||| ||||  ||||||||||||    
T  4895792 tcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactca 4895739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 28124610 - 28124663
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||    
T  28124610 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactca 28124663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 28126437 - 28126490
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||    
T  28126437 tcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactca 28126490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 36989570 - 36989632
Alignment:
Q  77 aatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttc 139  Q
    ||||| ||||||| |||| |||||||||||||||||||||| |||||| |||||  |||||||    
T  36989570 aatgactacaataatgtttctatatatagagattagtttgaataactaactctacataacttc 36989632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 21631461 - 21631513
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaa 292  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||||| ||||    
T  21631461 taatagtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaa 21631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 36989612 - 36989646
Alignment:
Q  211 taactaactccacataacttccaactatcttaata 245  Q
    |||||||||| ||||||||||||||||||||||||    
T  36989612 taactaactctacataacttccaactatcttaata 36989646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21631159 - 21631212
Alignment:
Q  127 tctaactaacttctaaccaagctactaaccctagtttacttatcaactaactat 180  Q
    ||||||||||| |||||| | | ||||||| |||||||| ||||||||||||||    
T  21631159 tctaactaactcctaacctaccaactaaccatagtttacatatcaactaactat 21631212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21633120 - 21633173
Alignment:
Q  127 tctaactaacttctaaccaagctactaaccctagtttacttatcaactaactat 180  Q
    ||||||||||| |||||| | | ||||||| |||||||| ||||||||||||||    
T  21633120 tctaactaactcctaacctaccaactaaccatagtttacatatcaactaactat 21633173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 25471955 - 25472003
Alignment:
Q  141 aaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    |||||| |||||||| |||||| || |||||||||||||||||| ||||    
T  25471955 aaccaacctactaactctagttaacctatcaactaactatagttaatta 25472003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 23564697 - 23565006
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaat----------------------gaa 78  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||                      |||    
T  23564697 gtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 23564796  T
Q  79 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23564797 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaact 23564896  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattc-ac 277  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||  |    
T  23564897 atagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacagcctccctcaaactcaaaacggggaaattcgcc 23564996  T
Q  278 aatttgagtt 287  Q
    ||||||||||    
T  23564997 aatttgagtt 23565006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7040570 - 7040306
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  7040570 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 7040471  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7040470 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaact 7040371  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7040370 atagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 7040306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 52520715 - 52520458
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  52520715 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 52520616  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaa 271  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||    
T  52520615 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaacagcctccctcaaactcaaaatggggaa 52520516  T
Q  272 attca-caatttgagttcgaaatacaatg-aattacaattgaaatttgcatactataa 327  Q
    ||||| ||||||||| | | ||||||||| || |||||||| |||||  |||||||||    
T  52520515 attcaccaatttgagcttggaatacaatgaaagtacaattggaatttatatactataa 52520458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23566391 - 23566626
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaa-actcattgtaga-aatgaatgagtacaatagtgttccta 98  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| | | | ||   ||| ||||||||||||||||||||||||||    
T  23566391 gtcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactcaaagtagattgataaaagataatgaatgagtacaatagtgttccta 23566490  T
Q  99 tatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgattactaactcaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |    
T  23566491 tatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaagtctagtttacttatcaactaactatagttgattactaactcta 23566590  T
Q  199 gtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||         |||||||||||||||| ||||||||||||    
T  23566591 gtctaac---------taactccacataactttcaactatcttaa 23566626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 18656317 - 18656064
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  18656317 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 18656218  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||  ||||||||||||    
T  18656217 tgagtacaatagttttcctatatatagagattagtttgagtaactaactctaactaacttctaactaagctactaactctagtttagctatcaactaact 18656118  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttcc 232  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  18656117 atagttgattactaactctagtctaactaccttaactaacttcacataacttcc 18656064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 52518873 - 52518702
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  52518873 atgattgagtacaacagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 52518774  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  52518773 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaa 52518702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 23985887 - 23985773
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  23985887 tgaatgagtacaatagtgttcctatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 23985788  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  23985787 aactatagttgatta 23985773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 3529263 - 3529379
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||    
T  3529263 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactttagtttacctatcaa 3529362  T
Q  173 ctaactatagttgatta 189  Q
    ||||||| |||||||||    
T  3529363 ctaactacagttgatta 3529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 54296542 - 54296454
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  54296542 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtt 54296454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 3274580 - 3274726
Alignment:
Q  97 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgattactaactc 196  Q
    |||||||||| |||| ||||||||| || ||||||||||||||||| ||||| |||||| || |||||| |||||||||| ||||||||||||||||||     
T  3274580 tatatatagaaattaatttgagtaattaactctaactaacttctaatcaagccactaactcttgtttacctatcaactaattatagttgattactaacta 3274679  T
Q  197 aagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
     ||| | |||||||||||||||| || ||||||||||||||| ||||    
T  3274680 tagttttactaccttaactaacttcatataacttccaactattttaa 3274726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 52545234 - 52545333
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatt 188  Q
    ||||||||||||||||||| |||||| | ||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  52545234 agtgttcctatatatagagtttagtt-gtgtaactaactctaaccaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatt 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 24807522 - 24807423
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatt 188  Q
    ||||||||||||||||||  |||||| | ||||||| ||||  ||||||  |||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  24807522 agtgttcctatatatagattttagtt-gtgtaactaactcttcctaactcttaaccaagcttctaactctaatttacctatcaactaactatagttgatt 24807424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 56074680 - 56074746
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||| |||||||| || |||||||||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaat 56074746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 18807593 - 18807655
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattcac--aatttgagttcgaaatacaatgaa 301  Q
    |||||| | ||||||||||||||||||||||||||||  | |||||||| |||||||||||||    
T  18807593 taatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaa 18807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 52518968 - 52518915
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||||||| ||||| |||||||| | ||||| ||||||||||||    
T  52518968 tcatagatgtaagcaagagagcaagcataagagaactcatgtgggagatactca 52518915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 52520810 - 52520757
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    ||||||||||||| |||| ||||| |||||||||| ||||| ||||||||||||    
T  52520810 tcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactca 52520757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 52545137 - 52545197
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| ||| | |||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  52545137 agcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcattatagaa 52545197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 18395816 - 18395866
Alignment:
Q  139 ctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    |||||||| ||| ||||  |||||||| |||||||||||||||||||||||    
T  18395816 ctaaccaacctattaactatagtttacctatcaactaactatagttgatta 18395866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 54296617 - 54296571
Alignment:
Q  21 agcaaacataagagtattcatgagggagatactcaaagaaactcatt 67  Q
    ||||| |||||||||| | |||||||||||||||| |||||||||||    
T  54296617 agcaagcataagagtactgatgagggagatactcatagaaactcatt 54296571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30224439 - 30224175
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  30224439 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 30224340  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30224339 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaact 30224240  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30224239 atagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaa 30224175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 3375539 - 3375711
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3375539 aatgaatgggtacaatagagttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaaccctagtttacttatcaa 3375638  T
Q  173 ctaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 245  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3375639 ctaactatagttgattactaacagaagtctaactaccttaactaactccacataacttccaactatcttaata 3375711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 31032120 - 31032287
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    ||||||||||  | || |||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||||    
T  31032120 atgaatgagtgtagtaatgttcctatatatagagattagtttgagtaactaactctaa----cttctaaccaagctactaaccctagtttacttatcaac 31032215  T
Q  174 taactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31032216 taactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 31032287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5567635 - 5567371
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  5567635 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 5567536  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||  ||||||||||||    
T  5567535 tgagtacaatagttttcctatatatagagattagtttgagtaactaactccaactaacttctaactaagctactaactctagtttagctatcaactaact 5567436  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||    
T  5567435 atagttgattactaactctagtctaactactttaactaacttcacataacttccagctattttaa 5567371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 6428854 - 6428699
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||    
T  6428854 atgaatgattacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttttaactaaggtactaactctagtttacttatcaac 6428755  T
Q  174 taactatagttgattactaactcaagtctaactaccttaactaactccacataacttc 231  Q
    ||| |||||||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  6428754 taattatagttgattactaactcttgtctaactac--taactaactccacataacttc 6428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25249215 - 25248957
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    |||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  25249215 gtcatatatgtaagcaagatagcaagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatcatgaa 25249116  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttac---ttatcaacta 175  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||   ||||||| ||    
T  25249115 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctttaactaacttctaaccaagctactaactctagtttacttattatcaatta 25249016  T
Q  176 actatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    ||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||||    
T  25249015 actatagttgattactaactctagtc---------taactaactccacataacttccaactatcttaa 25248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 3379231 - 3379366
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||  |||||||    
T  3379231 atgaatgagtacaatagttttccttaatatagagattagtttgagtaactaactctaactaacttctaactaaactactaactctagtttaactatcaac 3379330  T
Q  174 taactatagttgattactaactcaagtctaactacc 209  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3379331 taactatagttgattactaactctagtctaactacc 3379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 36535873 - 36536035
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattg-tagaa----atgaatgagtacaatagtgttc 95  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||||  | |||  ||   |||| || ||    |||||||||||||| ||| ||     
T  36535873 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat--tgaaatgaatagattgataaaagatgatgaatgagtacaacagtattg 36535970  T
Q  96 ctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctag 160  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  36535971 ctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctag 36536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6428950 - 6428879
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtaga 72  Q
    |||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||    
T  6428950 gtcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattgtaga 6428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 14935638 - 14935576
Alignment:
Q  127 tctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  14935638 tctaactaacttctaaccaagttactaactctagtttacctatcaactaactatagttgatta 14935576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 31032038 - 31032098
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa 31032098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 5567676 - 5567727
Alignment:
Q  192 aactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||| ||||    
T  5567676 aactctagtctaactaccttaactaacttcacataacttccagctattttaa 5567727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3375456 - 3375510
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||| |||||||||| || ||||||| ||||| ||||||||||||    
T  3375456 gtcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactca 3375510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 19473728 - 19473668
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| |||||  ||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  19473728 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaa 19473668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 19544653 - 19544593
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| |||||  ||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  19544653 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaa 19544593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 19588043 - 19588103
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| |||||  ||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  19588043 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaa 19588103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3379149 - 3379209
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| |||||  |||| |||| ||||| |||||||||||| ||||||||||| |||||    
T  3379149 agcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatagaa 3379209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29758329 - 29758065
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  29758329 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaa 29758230  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29758229 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttacttatcaactaact 29758130  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758129 atagttgattactaagtctagtctaactaccttaactaactccacataacttccaactatcttaa 29758065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 8759203 - 8759271
Alignment:
Q  177 ctatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759203 ctatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 8759271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 20516060 - 20516227
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttg----agtaactac-----ctctaactaacttctaaccaagctactaaccctagttt 163  Q
    ||||||||||||||||||||||| |||||||| | |||||||||    ||||||||      ||||||||| ||| ||||||||||||||||||||| |     
T  20516060 aatgaatgagtacaatagtgttcttatatataaaaattagtttgtttgagtaactaaactaactctaactatcttttaaccaagctactaaccctagcta 20516159  T
Q  164 acttatcaactaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaa 234  Q
    |||||   ||||||||||||| ||||||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  20516160 actta---actaactatagttaattactaactccagtttaattaccttaactaactgcacataacttccaa 20516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 18776746 - 18776617
Alignment:
Q  237 atcttaatagcctccctcaaactcaaaatgggaaaattcac-aatttgagttcgaaatacaatgaattacaattgaaatttgcatactataaggacgaag 335  Q
    ||||||| ||||||||| |||||||||||||  |||||||| ||||| |||| | |||| ||||||||||||||||||| ||||||||||||| || ||     
T  18776746 atcttaacagcctcccttaaactcaaaatggagaaattcaccaatttcagtttggaataaaatgaattacaattgaaatgtgcatactataagaactaat 18776647  T
Q  336 t-aaaacataaggtgtaaactagtaaaaga 364  Q
    | ||||||   |||||||||||||||||||    
T  18776646 taaaaacaaggggtgtaaactagtaaaaga 18776617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 8759115 - 8759163
Alignment:
Q  30 aagagtattcatgagggagatactcaaagaaactcattgtagaaatgaa 78  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8759115 aagagtactcatgagggagatactcaaagaaactcattgtagaaatgaa 8759163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 31155713 - 31155763
Alignment:
Q  188 tactaactcaagtctaactaccttaactaactccacataacttccaactat 238  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  31155713 tactaactctagtttaactaccttaactaactccgcataacttccaactat 31155763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 25306708 - 25306655
Alignment:
Q  249 tccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatgaa 301  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  25306708 tccctcaaactcaaagtgggaaaattcaccaatttgagtttgaaatacaatgaa 25306655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 18612074 - 18612140
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    ||||||| ||||| |||||||||| ||||| |||||||| | | | ||||||||| |||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaat 18612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 17308586 - 17308534
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaa 292  Q
    |||||| | ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  17308586 taatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaa 17308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 18739730 - 18739671
Alignment:
Q  129 taactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||||| |||||||  |||||||| |||||| || ||||||||||||||| |||||||    
T  18739730 taactaact-ctaaccagactactaactctagttaacgtatcaactaactataattgatta 18739671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 19645322 - 19645631
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaat----------------------gaa 78  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||                      |||    
T  19645322 gtcatagatgtaaccaagatagcaagtataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagattgataaaagataatgaa 19645421  T
Q  79 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||    
T  19645422 tgagtacaatagtgttcttatatatagagattagtttgagtaactacctctgactaatttctaaccaagctactaactttagtttacttatcaactaact 19645521  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattca-c 277  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||| |    
T  19645522 ataattgattactaactctagtctaactaccttaactaactccacatatcttctaactatcttaagagcctccctcaaactcaaaatggggaaattcacc 19645621  T
Q  278 aatttgagtt 287  Q
    ||||||||||    
T  19645622 aatttgagtt 19645631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5378942 - 5378616
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||                         
T  5378942 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 5378843  T
Q  80 -gagtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaac 177  Q
     ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  5378842 tgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaac 5378743  T
Q  178 tatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaattc 275  Q
    |||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||||||||| ||||||    
T  5378742 tatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactaatttaacagcctccctcaaactcaaaatggggaaattc 5378643  T
Q  276 a-caatttgagttcgaaatacaatgaa 301  Q
    | ||||||||| | | |||||||||||    
T  5378642 accaatttgagattggaatacaatgaa 5378616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 15149180 - 15149334
Alignment:
Q  92 gttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgattact 191  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15149180 gttcctatatatagaaattaatttgagtaactaactctaactaacttctaaccaagctactgaccctagtttacttatcaactaactatagttgattact 15149279  T
Q  192 aactcaagtctaactaccttaactaactccacataacttccaactatcttaatag 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15149280 aactcaagtctaactaccttaactaactccgcataacttccaactatcttaatag 15149334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5377087 - 5376820
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||                         
T  5377087 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 5376988  T
Q  80 -gagtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaac 177  Q
     ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  5376987 tgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaac 5376888  T
Q  178 tatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||  | |||| |||||||||||||||||||||| || ||||||||||||||| ||||    
T  5376887 tatagttgattacaattactctagtctaactaccttaactaactacatataacttccaactattttaa 5376820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1088675 - 1088915
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaa-gaaactcattgtagaa---------------------atgaa 78  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| |||||||||| |||||                     |||||    
T  1088675 gtcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcattatagaatgaatagattgataaaagatgatgaa 1088774  T
Q  79 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  1088775 tgagtacaatagtgttcctatatatagagattagtttgactaactaactctaactaacttctaacaaagctactaactctaatttacttatcaactaact 1088874  T
Q  179 atagttgattactaactcaagtctaactaccttaactaact 219  Q
    ||||||||| |||||||| | | ||||||| ||||||||||    
T  1088875 atagttgatcactaactctaatttaactactttaactaact 1088915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 15868507 - 15868391
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||    
T  15868507 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctattaactctagtttacctatcaa 15868408  T
Q  173 ctaactatagttgatta 189  Q
    |||||||||||||||||    
T  15868407 ctaactatagttgatta 15868391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 33866212 - 33866098
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  33866212 tgaatgagtacaatagtgttcctatatatagagattagtctgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 33866113  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  33866112 aactatagttgatta 33866098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 33869359 - 33869245
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  33869359 tgaatgcgtacaatagtgttcctatatatagagattagtttaagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 33869260  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  33869259 aactatagttgatta 33869245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 15866695 - 15866579
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||| ||||||    
T  15866695 aatgaatgagtacaatagtgttcctaaatatagagattagtttgagtaactaactctaactaacttctacccaagctattaactctagtttacctatcaa 15866596  T
Q  173 ctaactatagttgatta 189  Q
    |||||||||||||||||    
T  15866595 ctaactatagttgatta 15866579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 9415032 - 9414935
Alignment:
Q  175 aactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaatgggaaaa 272  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||||||||| ||||    
T  9415032 aactatagttgatcactaactctagtctaactaccttaactaactccgcataacttccaactattttaacagcctcccttaaactcaaaatggaaaaa 9414935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 9415176 - 9415095
Alignment:
Q  80 gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagt 161  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||    
T  9415176 gagtacaatagtgttcttatatatagagattagtttcactaactaactctaactaacttctaaccaagctactaactctagt 9415095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 9415107 - 9415031
Alignment:
Q  188 tactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatagcctccctcaaactcaaaa 264  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  9415107 tactaactctagtctaacttccttaactaactccacataacttccaactattttaacagcctcccttaaactcaaaa 9415031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 14611182 - 14611083
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatt 188  Q
    ||||||||||||||||||| |||||| | ||||||| |||||| |||||  |||| ||||||||||| ||| ||||| ||||||||||| ||||||||||    
T  14611182 agtgttcctatatatagagtttagtt-gtgtaactaactctaaataactcttaacgaagctactaactctaatttacctatcaactaaccatagttgatt 14611084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 32079980 - 32079909
Alignment:
Q  118 gtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||| ||||||||||||  |||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  32079980 gtaactaactctaactaactcttaaccaagcttctaactctagtttacctatcaactaactatagttgatta 32079909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 8915676 - 8915599
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    |||||||||||||||||| ||||| |||||||||| || || || ||||||||| ||||||| ||| |||||||||||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaat 8915599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 24544818 - 24544757
Alignment:
Q  11 taagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtaga 72  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||| |||||    
T  24544818 taagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 9415276 - 9415205
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||| |||||| ||| | | |||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  9415276 tcataaatgtaaacaaaagaacaaacataagagtactcatgtgggagatactcatagaaactcattgtagaa 9415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 33869235 - 33869174
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatgaa 301  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  33869235 taatagtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaaaacaatgaa 33869174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 15868381 - 15868320
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatgaa 301  Q
    |||||| | ||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||    
T  15868381 taatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaaacaatgaa 15868320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 28884370 - 28884487
Alignment:
Q  73 aatgaatgagtacaat-agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatca 171  Q
    |||||||||||||||| | ||||||| |||||| |||||| ||  ||||||   ||||||| ||||   ||| ||||| ||||| |||||| || |||||    
T  28884370 aatgaatgagtacaatgattgttcctttatatacagattaattgaagtaaccgactctaaccaactataaacaaagcttctaactctagttaacctatca 28884469  T
Q  172 actaactatagttgatta 189  Q
    ||||||||||| ||||||    
T  28884470 actaactatagctgatta 28884487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 14620570 - 14620510
Alignment:
Q  129 taactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    |||||||||  ||||||||||||||||  |||||||| ||||||||||  |||||||||||    
T  14620570 taactaactcttaaccaagctactaactgtagtttacctatcaactaatcatagttgatta 14620510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 15149108 - 15149138
Alignment:
Q  49 atactcaaagaaactcattgtagaaatgaat 79  Q
    |||||||||||||||||||||||||||||||    
T  15149108 atactcaaagaaactcattgtagaaatgaat 15149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 30376265 - 30376227
Alignment:
Q  205 ctaccttaactaactccacataacttccaactatcttaa 243  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  30376265 ctacgttaactaactccacataacttccaactattttaa 30376227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 14620500 - 14620439
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattcac-aatttgagttcgaaatacaatgaa 301  Q
    |||||| | |||||||| | |||||||| |||||||| |||||||||| |||||||||||||    
T  14620500 taatagtccccctcaaatttaaaatggggaaattcaccaatttgagtttgaaatacaatgaa 14620439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 20985831 - 20985908
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    |||||||||||| |||| | |||| |||||||||| ||||| || ||||||| | | ||| ||||| |||||||||||    
T  20985831 tcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagatacttataaaaattcattatagaaatgaat 20985908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 14619022 - 14618975
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaact 137  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||||||    
T  14619022 agtgttcctatatatagagtttag-ttgtgtaactaactctaactaact 14618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 17449519 - 17449253
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtaga---------------------aatgaat 79  Q
    ||||||||||||||||||||||||| || ||||||| ||||| |||||||||||| |||| |||||||||||                     |||||||    
T  17449519 gtcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagattgaaaaagataatgaat 17449420  T
Q  80 gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaacta 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17449419 gagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacgaagctactaaccctagtttacttatcaactaacta 17449320  T
Q  180 tagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaatag 246  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||    
T  17449319 tagttgattactaactcaagtccaactaccttaactaactccatataacttccaactatcataatag 17449253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 16808696 - 16808867
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  16808696 atgaatgagtacaatagtgttcatatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaac 16808795  T
Q  174 taactatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  16808796 taactatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaa 16808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 9312144 - 9312028
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9312144 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaa 9312045  T
Q  173 ctaactatagttgatta 189  Q
    |||||||||||||||||    
T  9312044 ctaactatagttgatta 9312028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 3282914 - 3282800
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3282914 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 3282815  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  3282814 aactatagttgatta 3282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 3284615 - 3284501
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3284615 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 3284516  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  3284515 aactatagttgatta 3284501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 9310527 - 9310411
Alignment:
Q  73 aatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaa 172  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  9310527 aatgaatgagtacaatagtgttcctatatatagatattaatttgagtaactaactctaactaacttctaaccaagctactaactctagtttacttatcaa 9310428  T
Q  173 ctaactatagttgatta 189  Q
    |||||||||||||||||    
T  9310427 ctaactatagttgatta 9310411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 48940726 - 48940621
Alignment:
Q  138 tctaaccaagctactaaccctagtttacttatcaactaactatagttgattactaactcaagtctaactaccttaactaactccacataacttccaacta 237  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  48940726 tctaaccaaactactaactctagtttacttatcaactaactatagttgattactaactcttgtctaactaccttaactaactccacataacttccaacta 48940627  T
Q  238 tcttaa 243  Q
    | ||||    
T  48940626 ttttaa 48940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 37664695 - 37664787
Alignment:
Q  97 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  37664695 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37664787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 37674417 - 37674509
Alignment:
Q  97 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  37674417 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37674509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 37702277 - 37702185
Alignment:
Q  97 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  37702277 tatatatagagattagtttgaataactaactctaactaatttctaaccaagctactaactctagtttacctatcaactaactatagttgatta 37702185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 902175 - 902076
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatt 188  Q
    |||||||||||||| |||| ||| || | ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  902175 agtgttcctatatagagagtttaatt-gtgtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagatgatt 902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 48941713 - 48941646
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaa 142  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||| | |||||||||||||||||    
T  48941713 tgaatgagtacaatagtgtttatatgtatagagattagtttgagtaaccaactctaactaacttctaa 48941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 5924946 - 5925006
Alignment:
Q  129 taactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatta 189  Q
    |||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||    
T  5924946 taactaacttctaaccaaactactaactctaatttacctatcaactaactatagttgatta 5925006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 48941810 - 48941747
Alignment:
Q  4 atagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcatt 67  Q
    |||||||||||||||| |||||  ||||||||||||||| | |||||||||| | |||||||||    
T  48941810 atagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcatt 48941747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 3284491 - 3284430
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattcac-aatttgagttcgaaatacaatgaa 301  Q
    |||||| | |||||||||||||| |||||||| |||| |||||||||| |||||||||||||    
T  3284491 taatagtccccctcaaactcaaagtgggaaaactcaccaatttgagtttgaaatacaatgaa 3284430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16808601 - 16808654
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    |||||||||||||||||| ||||| |||||||||| |||||  |||||||||||    
T  16808601 tcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactca 16808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 51020609 - 51020572
Alignment:
Q  206 taccttaactaactccacataacttccaactatcttaa 243  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  51020609 taccttaaccaactccacataacttccaactattttaa 51020572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5924828 - 5924880
Alignment:
Q  21 agcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||| |||||||||||||||   ||||||||||| ||||||||||| |||||    
T  5924828 agcaagcataagagtattcatataggagatactcatagaaactcattatagaa 5924880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 17402804 - 17403071
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||                         
T  17402804 gtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaa 17402903  T
Q  80 -gagtacaatagtgttcctatatata-gagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaac 177  Q
     ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17402904 tgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttacttatcaactaac 17403003  T
Q  178 tatagttgattac--taactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||||||||||||  | |||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  17403004 tatagttgattacaattactctagtctaactaccttaactaactacacataacttccaactattttaa 17403071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 1140210 - 1139956
Alignment:
Q  1 gtcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat--------------------- 79  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||                         
T  1140210 gtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaa 1140111  T
Q  80 -gagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||    
T  1140110 tgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacc------------ctagtttacttatcaactaact 1140023  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaata 245  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1140022 atagttgattactaactcaagtccaactaccttaactaactccatataacttccaactatcttaata 1139956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6789829 - 6789565
Alignment:
Q  1 gtcatagatgtaagcaa-gatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtaga---------------------aatgaa 78  Q
    ||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||                     | ||||    
T  6789829 gtcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaatgaatagattgaaaaaagatagtgaa 6789730  T
Q  79 tgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaact 178  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  6789729 tgagtacaatagtattcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttcacttatccactaact 6789630  T
Q  179 atagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 243  Q
    |||  ||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||| ||||    
T  6789629 atacatgattaccaactctagtctaactaccttaactaactacacattacttccaactattttaa 6789565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 20302725 - 20302625
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact-aactatagttgat 187  Q
    ||||||| ||||||||||||||||||||| |||| | || ||||| |||| ||||||| |||||||  |||||| || | |||||| |||||||||| ||    
T  20302725 agtgttcttatatatagagattagtttgaataaccaactataacttactt-taaccaatctactaagtctagttaacctttcaactaaactatagtttat 20302627  T
Q  188 ta 189  Q
    ||    
T  20302626 ta 20302625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 20327259 - 20327167
Alignment:
Q  97 tatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact-aactatagttgatta 189  Q
    |||||| ||||||||||||||||||| | || ||||| |||| |||||||||||||||  |||||| || | |||||| |||||||||| ||||    
T  20327259 tatatagagagattagtttgagtaaccaactataacttactt-taaccaagctactaagtctagttaacctttcaactaaactatagtttatta 20327167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 20302825 - 20302783
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactca 55  Q
    ||||||| |||||||||| || |||||||||||||||||||||    
T  20302825 agcaagaaagcaaacataggactattcatgagggagatactca 20302783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 4608988 - 4608927
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattcac-aatttgagttcgaaatacaatgaa 301  Q
    |||||| | |||||||||||||||||| ||||||||| |||||||||| || |||| |||||    
T  4608988 taatagtccccctcaaactcaaaatggaaaaattcactaatttgagtttgagatactatgaa 4608927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 41874497 - 41874441
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaa 146  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||||||  |||||||    
T  41874497 agtgttcctatatatagagtttag-ttgtgtaactaactctaactaactcttaaccaa 41874441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 6339 - 6225
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |    
T  6339 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaatt 6240  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  6239 aactatagttgatta 6225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 6215 - 6158
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaa 297  Q
    |||||| | ||||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  6215 taatagtccccctcaaactcaaaatggggaaaatcaccaatttgagtttgaaatacaa 6158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 39787177 - 39787291
Alignment:
Q  75 tgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaact 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39787177 tgaatgagtaaaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctatcaact 39787276  T
Q  175 aactatagttgatta 189  Q
    |||||||||||||||    
T  39787277 aactatagttgatta 39787291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 4895939 - 4896010
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatg--aattacaatt 309  Q
    |||||| | ||||||||||||||||||| ||||||| ||||||||||| |||||||||||  ||||||||||    
T  4895939 taatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaatacaatggaaattacaatt 4896010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 20012959 - 20013017
Alignment:
Q  15 caagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||| ||||| |||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  20012959 caagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa 20013017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 6569932 - 6569888
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaact 133  Q
    |||||||||||||||||||||||||| || |||||| ||||||||    
T  6569932 agtgttcctatatatagagattagttggactaactaactctaact 6569888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 33689848 - 33689796
Alignment:
Q  250 ccctcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatgaa 301  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||    
T  33689848 ccctcaaactcaaaatggggaaattcaccaatttgagtttgaaacacaatgaa 33689796  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 25502243 - 25502305
Alignment:
Q  241 taatagcctccctcaaactcaaaatgggaaaattca-caatttgagttcg-aaatacaatgaa 301  Q
    |||||| | ||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||    
T  25502243 taatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaatacaatgaa 25502305  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 10412242 - 10412181
Alignment:
Q  241 taatagcctccctcaaactcaaaatgg-gaaaattcacaatttgagttcgaaatacaatgaa 301  Q
    |||||| | |||||||||||||||| | |||||||  ||||||||||| |||||||||||||    
T  10412242 taatagtccccctcaaactcaaaattgagaaaattaccaatttgagtttgaaatacaatgaa 10412181  T

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Target: scaffold0057 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 58900 - 58785
Alignment:
Q  74 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||  |||    
T  58900 atgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttacctactaac 58801  T
Q  174 taactatagttgatta 189  Q
    ||||||||||||||||    
T  58800 taactatagttgatta 58785  T

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Target: scaffold0057; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 58982 - 58922
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa 58922  T

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Target: scaffold0006 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 39243 - 39144
Alignment:
Q  89 agtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaaccctagtttacttatcaactaactatagttgatt 188  Q
    ||||||||||||||||||| |||||| | ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39243 agtgttcctatatatagagtttagtt-gtgtaactaactttaactaacttctaaccaagctactaactctagtttacttatcaactaactatagttgatt 39145  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 39341 - 39275
Alignment:
Q  13 agcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaaatgaat 79  Q
    ||||||| ||||||  |||||||| ||||| |||||||||||| | ||||||||| |||||||||||    
T  39341 agcaagaaagcaaaattaagagtactcatgtgggagatactcataaaaactcattatagaaatgaat 39275  T

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Target: scaffold0311 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 15018 - 14914
Alignment:
Q  259 tcaaaatgggaaaattcac-aatttgagttcgaaatacaatgaattacaattgaaatttgcatactataaggacgaagtaaaacataaggtgtaaactag 357  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||||| ||| || |||| ||||| | ||||||||||||    
T  15018 tcaaaatggggaaattcaccaatttgagtttggaatacaatgaattacaattgaaatttgcatactacaagaactaagtcaaacaaagggtgtaaactag 14919  T
Q  358 taaaa 362  Q
    |||||    
T  14918 taaaa 14914  T

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Target: scaffold0189 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 19153 - 19082
Alignment:
Q  2 tcatagatgtaagcaagatagcaaacataagagtattcatgagggagatactcaaagaaactcattgtagaa 73  Q
    ||||||||||||||||||||| || |||| ||||| ||||| ||||||| |||| ||||||||||| |||||    
T  19153 tcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcatagaaactcattatagaa 19082  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 11076 - 11027
Alignment:
Q  253 tcaaactcaaaatgggaaaattca-caatttgagttcgaaatacaatgaa 301  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||| |||||    
T  11076 tcaaactcaaagtgggaaaattcaccaatttgagtttgaaatactatgaa 11027  T

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