View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_high_9 (Length: 336)

Name: NF12723_high_9
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_high_9
NF12723_high_9
[»] chr1 (4 HSPs)
chr1 (1-320)||(47626834-47627153)
chr1 (134-253)||(47583993-47584112)
chr1 (136-253)||(47698053-47698170)
chr1 (136-253)||(47574276-47574393)
[»] chr6 (10 HSPs)
chr6 (137-253)||(20236379-20236495)
chr6 (137-253)||(22206510-22206626)
chr6 (133-253)||(22086439-22086559)
chr6 (137-214)||(22130363-22130440)
chr6 (137-284)||(18979956-18980102)
chr6 (137-284)||(18996058-18996205)
chr6 (137-284)||(20084252-20084398)
chr6 (137-292)||(20232877-20233032)
chr6 (137-292)||(22126861-22127016)
chr6 (133-253)||(21968546-21968666)
[»] scaffold0074 (1 HSPs)
scaffold0074 (137-284)||(49254-49401)
[»] chr5 (1 HSPs)
chr5 (136-258)||(470366-470488)
[»] scaffold0007 (1 HSPs)
scaffold0007 (137-253)||(6831-6947)
[»] chr8 (1 HSPs)
chr8 (137-253)||(10401925-10402041)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 47627153 - 47626834
Alignment:
Q  1 ccgttcaggccaagttaattgcttttgcttccgagaatctacaaattatggttagaaccaaacacataagattgaactttaaaatgtgaaacttcaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627153 ccgttcaggccaagttaattgcttttgcttccgagaatctacaaattatggttagaaccaaacacataagattgaactttaaaatgtgaaacttcaacta 47627054  T
Q  101 gaattgaaataaatactgaagtgtcaatgatatcataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627053 gaattgaaataaatactgaagtgtcaatgatatcataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttgg 47626954  T
Q  201 tcttcaaggcaaaatcctattaacctcactaaatttctgtgttgaagtttggcaattaacatcacctcatttttgaattcttctgctccttggccagaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47626953 tcttcaaggcaaaatcctattaacctcactaaatttctgtgttgaagtttggcaattaacatcacctcatttttgaattcttctgctccttggccagaag 47626854  T
Q  301 ttttggacagtctcttcaca 320  Q
    ||||||||||||||||||||    
T  47626853 ttttggacagtctcttcaca 47626834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 47584112 - 47583993
Alignment:
Q  134 cataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaa 233  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||  |||||||| ||||  ||||| |  |||||||||| ||| ||||||| |    
T  47584112 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 47584013  T
Q  234 tttctgtgttgaagtttggc 253  Q
    |||||||||||||| |||||    
T  47584012 tttctgtgttgaagcttggc 47583993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 47698170 - 47698053
Alignment:
Q  136 taccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaatt 235  Q
    |||||||||| |||| ||| ||||| ||||| | |||||||||||| | ||| || || |||||| |||| | |||||| ||||||||  |||| |||||    
T  47698170 taccaaatagaaagtaatcgagactcttgttggtcacatattcataaatgagcattttctcttggccttccaagcaaaaacctattaaagtcaccaaatt 47698071  T
Q  236 tctgtgttgaagtttggc 253  Q
    ||| ||||||||||||||    
T  47698070 tctatgttgaagtttggc 47698053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 47574393 - 47574276
Alignment:
Q  136 taccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaatt 235  Q
    |||||||||  |||| ||||||||| ||||| |||||||| ||| |||  |||||||| || |  ||||| |  |||||||||| ||| || |||| |||    
T  47574393 taccaaataaaaagtaatcaagactcttgtttggcacatactcaaagattagtatcttctcctcatcttccaaacaaaatcctagtaatcttactagatt 47574294  T
Q  236 tctgtgttgaagtttggc 253  Q
    |||||||||||| |||||    
T  47574293 tctgtgttgaagcttggc 47574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 20236379 - 20236495
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||| ||||||||| ||||| |||||| ||||||| |  ||||| || ||||| ||||||||||||||||| || ||   ||||| ||||    
T  20236379 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 20236478  T
Q  237 ctgtgttgaagtttggc 253  Q
    || |||||||| |||||    
T  20236479 ctatgttgaagcttggc 20236495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 22206626 - 22206510
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||| ||||||||| ||||| |||||| ||||||| |  ||||| || ||||| ||||||||||||||||| || ||   ||||| ||||    
T  22206626 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 22206527  T
Q  237 ctgtgttgaagtttggc 253  Q
    || |||||||| |||||    
T  22206526 ctatgttgaagcttggc 22206510  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 22086439 - 22086559
Alignment:
Q  133 tcataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaa 232  Q
    ||||||||||||  |||| ||||||||||||||| |  ||||||||||| |  |||||||| || ||  ||||||||||||| || || ||  | ||||     
T  22086439 tcataccaaataaaaagtaatcaagacttttgttggaaacatattcataaataagtatcttctcatgtccttcaaggcaaaaaccaataaatgtgactag 22086538  T
Q  233 atttctgtgttgaagtttggc 253  Q
    ||||||||||||||| |||||    
T  22086539 atttctgtgttgaagcttggc 22086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 22130363 - 22130440
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaa 214  Q
    ||||||||| |||| ||||||||| ||||| |||||| ||||||| |  ||||| || ||||| ||||||||||||||    
T  22130363 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaa 22130440  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 18979956 - 18980102
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||  ||||||||||||||| |||||||||||||| |  ||||| |||||||  ||||||||| |||| || || ||    |||| ||||    
T  18979956 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat-ttttcttcttcttcaaggaaaaaaccaataaaagcaactagattt 18980054  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttct 284  Q
    || |||||||| ||||| || ||||  || ||||| ||||| ||||||    
T  18980055 ctatgttgaagcttggctatcaacaaaacttcattcttgaactcttct 18980102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 18996058 - 18996205
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||  ||||||||| | ||| |||||| ||||||| |  ||||| || ||||| |||||||||||||| || || ||   ||||| ||||    
T  18996058 accaaatagaaagaaatcaagactatagttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 18996157  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttct 284  Q
    || |||||||| ||||| || ||||  || ||||| ||||| ||||||    
T  18996158 ctatgttgaagcttggctatcaacaaaacttcattcttgaactcttct 18996205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 20084252 - 20084398
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||  ||||||||||||||| |||||||||||||| |  ||||| |||||||  ||||||||| |||| || || ||    |||| ||||    
T  20084252 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat-ttttcttcttcttcaaggaaaaaaccaataaaagcaactagattt 20084350  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttct 284  Q
    || |||||||| ||||| || ||||  || ||||| ||||| ||||||    
T  20084351 ctatgttgaagcttggctatcaacaaaacttcattcttgaactcttct 20084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 292
Target Start/End: Complemental strand, 20233032 - 20232877
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||  || |||||||| |  ||||| |||||||||||||| |  ||||| || ||||| ||||| |||||||| || || ||| | |||| ||||    
T  20233032 accaaataaaaactgatcaagtcccttgtttggcacatattcataaataagtattttctcttgttcttcgaggcaaaaaccaatgaacgtgactagattt 20232933  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttctgctccttg 292  Q
    |  |||||||| ||||| || ||||  |||||||| ||||| |||| ||| |||||    
T  20232932 cgatgttgaagcttggcgatcaacaaaacctcattcttgaactcttttgcaccttg 20232877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 292
Target Start/End: Complemental strand, 22127016 - 22126861
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||  || |||||||| |  ||||| |||||||||||||| |  ||||| || ||||| ||||| |||||||| || || ||| | |||| ||||    
T  22127016 accaaataaaaactgatcaagtcccttgtttggcacatattcataaataagtattttctcttgttcttcgaggcaaaaaccaatgaacgtgactagattt 22126917  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttctgctccttg 292  Q
    |  |||||||| ||||| || ||||  |||||||| ||||| |||| ||| |||||    
T  22126916 cgatgttgaagcttggcgatcaacaaaacctcattcttgaactcttttgcaccttg 22126861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 21968546 - 21968666
Alignment:
Q  133 tcataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaa 232  Q
    ||||||||||||  |||| ||||||||| ||||| |  ||||||||||| |  |||||||| || ||  ||||||| ||||| || || ||  ||||||     
T  21968546 tcataccaaataaaaagtaatcaagactcttgttggaaacatattcataaataagtatcttctcatgtccttcaagacaaaagccaataaaagtcactag 21968645  T
Q  233 atttctgtgttgaagtttggc 253  Q
    |||||| |||||||| |||||    
T  21968646 atttctatgttgaagcttggc 21968666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 284
Target Start/End: Complemental strand, 49401 - 49254
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||  ||||||||||||||| |||||| ||||||| |  ||||| || ||||| |||||||||||||| || || ||   ||||| ||||    
T  49401 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 49302  T
Q  237 ctgtgttgaagtttggcaattaacatcacctcatttttgaattcttct 284  Q
    || |||||||| ||||| || ||||  || ||||| ||||| ||||||    
T  49301 ctatgttgaagcttggctatcaacaaaacttcattcttgaactcttct 49254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 470366 - 470488
Alignment:
Q  136 taccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaatt 235  Q
    ||||||||||||| | ||||||||| || ||||||||||||||||| |  || || |||||| | ||||| | ||| ||||||| |||  |||| |||||    
T  470366 taccaaataggaaataatcaagactcttattaggcacatattcatatataagcattttttctcgttcttccaagcagaatcctagtaaagtcaccaaatt 470465  T
Q  236 tctgtgttgaagtttggcaatta 258  Q
    ||| |||||||| ||||| ||||    
T  470466 tctatgttgaagcttggctatta 470488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 6947 - 6831
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||| |||  ||||||||||||||| |||||| ||||||| |  ||||| || ||||| |||||||||||||| || || ||   ||||| ||||    
T  6947 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 6848  T
Q  237 ctgtgttgaagtttggc 253  Q
    || |||||||| |||||    
T  6847 ctatgttgaagcttggc 6831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 10401925 - 10402041
Alignment:
Q  137 accaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaattt 236  Q
    ||||||||  |||||||||||||| ||||| |||||||||||||| |  ||||| || || |  |||||||||||||| || || ||  | |||| ||||    
T  10401925 accaaataaaaagtgatcaagactcttgttcggcacatattcatatataagtattttctcctcttcttcaaggcaaaagccgatgaatgtgactagattt 10402024  T
Q  237 ctgtgttgaagtttggc 253  Q
    || |||||||| |||||    
T  10402025 ctatgttgaagcttggc 10402041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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