View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_low_1 (Length: 531)

Name: NF12723_low_1
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_low_1
NF12723_low_1
[»] chr2 (21 HSPs)
chr2 (5-181)||(25606176-25606353)
chr2 (309-386)||(38144016-38144093)
chr2 (307-428)||(26533278-26533398)
chr2 (312-428)||(26533579-26533695)
chr2 (309-385)||(44279303-44279379)
chr2 (320-428)||(31074227-31074334)
chr2 (341-429)||(8596463-8596550)
chr2 (224-306)||(25606411-25606493)
chr2 (309-382)||(27187238-27187311)
chr2 (309-382)||(27836780-27836853)
chr2 (309-382)||(27837052-27837125)
chr2 (309-357)||(27187487-27187535)
chr2 (309-357)||(27837301-27837349)
chr2 (309-431)||(44279006-44279128)
chr2 (449-520)||(28282805-28282876)
chr2 (224-306)||(38576885-38576967)
chr2 (222-307)||(9050072-9050157)
chr2 (474-523)||(16576254-16576303)
chr2 (309-346)||(27187002-27187039)
chr2 (309-346)||(27836544-27836581)
chr2 (222-306)||(28282693-28282777)
[»] chr1 (10 HSPs)
chr1 (309-431)||(32024952-32025073)
chr1 (309-431)||(32025248-32025369)
chr1 (309-430)||(32025544-32025664)
chr1 (309-386)||(9448665-9448742)
chr1 (309-379)||(31412441-31412511)
chr1 (454-523)||(10775149-10775218)
chr1 (309-386)||(51865810-51865887)
chr1 (474-523)||(46080977-46081026)
chr1 (309-386)||(4119117-4119194)
chr1 (478-523)||(52432671-52432716)
[»] scaffold0007 (1 HSPs)
scaffold0007 (309-430)||(262122-262242)
[»] chr6 (10 HSPs)
chr6 (309-428)||(30045448-30045566)
chr6 (309-386)||(1701922-1701999)
chr6 (309-386)||(32729553-32729630)
chr6 (455-524)||(32342587-32342656)
chr6 (314-382)||(1702205-1702273)
chr6 (474-517)||(20206481-20206524)
chr6 (474-517)||(22100504-22100547)
chr6 (315-380)||(28072126-28072191)
chr6 (344-386)||(29141559-29141601)
chr6 (475-524)||(32047181-32047230)
[»] chr7 (13 HSPs)
chr7 (309-429)||(8356210-8356329)
chr7 (309-386)||(3958388-3958465)
chr7 (309-431)||(23071746-23071867)
chr7 (309-380)||(23072348-23072419)
chr7 (309-428)||(13789497-13789615)
chr7 (309-386)||(17944567-17944644)
chr7 (309-385)||(23072052-23072128)
chr7 (309-386)||(3958094-3958170)
chr7 (227-283)||(32139020-32139076)
chr7 (311-386)||(37223838-37223913)
chr7 (226-260)||(22593566-22593600)
chr7 (474-520)||(29152350-29152396)
chr7 (467-515)||(22593597-22593645)
[»] scaffold0251 (1 HSPs)
scaffold0251 (309-431)||(12602-12723)
[»] chr4 (9 HSPs)
chr4 (309-386)||(19987941-19988018)
chr4 (309-386)||(19987647-19987724)
chr4 (309-386)||(8107455-8107532)
chr4 (325-386)||(7833796-7833857)
chr4 (309-382)||(38978715-38978788)
chr4 (309-385)||(8107176-8107252)
chr4 (222-306)||(25062362-25062446)
chr4 (309-377)||(18930785-18930853)
chr4 (474-522)||(25062496-25062544)
[»] chr5 (11 HSPs)
chr5 (309-429)||(10567341-10567460)
chr5 (309-386)||(36975928-36976005)
chr5 (313-428)||(15173456-15173570)
chr5 (331-386)||(39569958-39570013)
chr5 (313-386)||(22587007-22587080)
chr5 (467-522)||(22780196-22780251)
chr5 (457-519)||(14258902-14258964)
chr5 (309-350)||(9441302-9441343)
chr5 (309-386)||(36975239-36975316)
chr5 (309-385)||(10321615-10321691)
chr5 (474-522)||(17736775-17736823)
[»] chr8 (11 HSPs)
chr8 (309-386)||(34074293-34074370)
chr8 (309-386)||(34373638-34373715)
chr8 (313-386)||(34373934-34374007)
chr8 (224-306)||(29093581-29093663)
chr8 (309-386)||(15937851-15937928)
chr8 (474-523)||(32166655-32166704)
chr8 (309-379)||(9410528-9410598)
chr8 (309-359)||(22576677-22576727)
chr8 (309-386)||(21397239-21397316)
chr8 (309-386)||(21791732-21791809)
chr8 (467-523)||(12736053-12736109)
[»] chr3 (7 HSPs)
chr3 (307-361)||(7400835-7400889)
chr3 (319-371)||(13843672-13843724)
chr3 (309-428)||(3870769-3870887)
chr3 (309-386)||(19997105-19997182)
chr3 (467-523)||(42091811-42091867)
chr3 (227-287)||(2562969-2563029)
chr3 (474-522)||(54437812-54437860)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 25606176 - 25606353
Alignment:
Q  5 tggtgtgttactgcatgttaaattcaatgcgattttaaac-atgcacaatttattctacggtgacaaaattaattatgtaaagtaagtttattaggatta 103  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  25606176 tggtgtgttactgcatgttaaattcaatgcgattttaaaagatgcacaatttattctacggtgacaaaattaattatgtaaattaagtttattgggatta 25606275  T
Q  104 aatgtgagttgaatttacaactatttatatttgagtacattctagaaagaaaatacatgagattacactcaaatacca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  25606276 aatgtgagttgaatttacaactatttatatttgagtacattctagatcgaaaatacacgagattacactcaaatacca 25606353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 38144016 - 38144093
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  38144016 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactag 38144093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 428
Target Start/End: Original strand, 26533278 - 26533398
Alignment:
Q  307 tattaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctc 406  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||        ||||||||||||    
T  26533278 tattaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttg-ggttgggctctc 26533376  T
Q  407 accatgggcttaagtcctaaca 428  Q
      ||||||||||||||||||||    
T  26533377 ctcatgggcttaagtcctaaca 26533398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 428
Target Start/End: Original strand, 26533579 - 26533695
Alignment:
Q  312 ggagtcccacatcgagtagatcaaagtacttgatgtggtgctt-aagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcacca 410  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| || || ||||||||||||||||||||||||||        ||||||||||||  ||    
T  26533579 ggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttg-ggttgggctctcctca 26533677  T
Q  411 tgggcttaagtcctaaca 428  Q
    ||||||||||||||||||    
T  26533678 tgggcttaagtcctaaca 26533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 44279303 - 44279379
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggacta 385  Q
    |||||||||||||||| |||||||||||||  |||||| ||| ||||| |||||||||||||||||||||| |||||    
T  44279303 ttaggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagacta 44279379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 31074227 - 31074334
Alignment:
Q  320 acatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcaccatgggcttaa 419  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||||  | ||||||||||||        ||||||||||||  |||||||||||    
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttg-ggttgggctctcctcatgggcttaa 31074325  T
Q  420 gtcctaaca 428  Q
    |||||||||    
T  31074326 gtcctaaca 31074334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 8596550 - 8596463
Alignment:
Q  341 ttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcaccatgggcttaagtcctaacaa 429  Q
    |||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||  | |||||||||||||||||||    
T  8596550 ttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcctcgtgggcttaagtcctaacaa 8596463  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 25606411 - 25606493
Alignment:
Q  224 ttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattac 306  Q
    |||||||||| ||||||||||||||||||||  ||||  || ||||||||| | |||| |||||||||||||| |||||||||    
T  25606411 ttcttcatctgtttcattcaacatatgatatacatctccttcgttccataaacgaatcctacttgttattaagggtaaattac 25606493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 27187311 - 27187238
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattgga 382  Q
    ||||||||| |||||||||||||||||| ||||||||||| | |||||| | ||||||| || |||||||||||    
T  27187311 ttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattgga 27187238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 27836853 - 27836780
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattgga 382  Q
    ||||||||| |||||||||||||||||| ||||||||||| | |||||| | ||||||| || |||||||||||    
T  27836853 ttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattgga 27836780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 27837125 - 27837052
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattgga 382  Q
    ||||||||| |||||||||||||||||| ||||||||||| | |||||| | ||||||| || |||||||||||    
T  27837125 ttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattgga 27837052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 27187535 - 27187487
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaag 357  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  27187535 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaag 27187487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 27837349 - 27837301
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaag 357  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  27837349 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaag 27837301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 44279006 - 44279128
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||| |||||| | ||||||| |||   ||||||||| ||||| || |||||||||||||||||||||| |||        ||||||||||||      
T  44279006 ttaggagtctcacatcaaatagatcatagtgtatgatgtggtacttaaaccatgaggttctcccacctattggagtagtctttttgggttgggctctcct 44279105  T
Q  409 catgggcttaagtcctaacaatt 431  Q
    || ||| ||||||||||||||||    
T  44279106 cacgggtttaagtcctaacaatt 44279128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 28282805 - 28282876
Alignment:
Q  449 taggtttcaccattttaatttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcat 520  Q
    |||| ||||||||||| ||||||  ||||||||||||| ||||||||| || |||| ||||||||| |||||    
T  28282805 taggcttcaccattttgattttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 38576967 - 38576885
Alignment:
Q  224 ttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattac 306  Q
    |||||||||| ||||||||||||| |||| || ||||  || || |||||||| ||||||| |||| |||| |||||||||||    
T  38576967 ttcttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattac 38576885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 9050157 - 9050072
Alignment:
Q  222 acttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattact 307  Q
    ||||||||||||   |||||||||||||||| || |||| ||| ||| || |||| |||||| ||||| |||||| ||||||||||    
T  9050157 acttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatcatgcttgtcattaagggtaaattact 9050072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 16576254 - 16576303
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    ||||||||||||| ||||||| | |||| |||||||||||||||||||||    
T  16576254 ttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 27187039 - 27187002
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatg 346  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  27187039 ttaggagtctcacatcgagtagatcaaagtgcttgatg 27187002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 27836581 - 27836544
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatg 346  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  27836581 ttaggagtctcacatcgagtagatcaaagtgcttgatg 27836544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 28282693 - 28282777
Alignment:
Q  222 acttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattac 306  Q
    ||||||| ||||  ||||||||| || |||| || |||| ||| ||||||||||| |||  |||||||||||| | |||||||||    
T  28282693 acttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaattac 28282777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 32024952 - 32025073
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||      
T  32024952 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcct 32025050  T
Q  409 catgggcttaagtcctaacaatt 431  Q
    |||||||||||||||||||||||    
T  32025051 catgggcttaagtcctaacaatt 32025073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 32025248 - 32025369
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||      
T  32025248 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcct 32025346  T
Q  409 catgggcttaagtcctaacaatt 431  Q
    |||||||||||||||||||||||    
T  32025347 catgggcttaagtcctaacaatt 32025369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 32025544 - 32025664
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||      
T  32025544 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcct 32025642  T
Q  409 catgggcttaagtcctaacaat 430  Q
    ||||||||||||||||||||||    
T  32025643 catgggcttaagtcctaacaat 32025664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 9448742 - 9448665
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  9448742 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactag 9448665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 31412511 - 31412441
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctatt 379  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||    
T  31412511 ttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctatt 31412441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 10775149 - 10775218
Alignment:
Q  454 ttcaccattttaatttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    |||||||||||| |||||  ||| ||||||||| ||||||||| | || |||||||||||||||||||||    
T  10775149 ttcaccattttagttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctc 10775218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 51865810 - 51865887
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||||| ||||||| || |||  |||||||||| |||||| | ||| ||||||||||||||| ||||||    
T  51865810 ttaggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactag 51865887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 46080977 - 46081026
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  46080977 ttacaatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 4119117 - 4119194
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||| |||||  | ||  |||| |||||||| ||||| ||| ||||| | ||||||||    
T  4119117 ttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactag 4119194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 523
Target Start/End: Original strand, 52432671 - 52432716
Alignment:
Q  478 aatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    ||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  52432671 aatcaattaccattttcatctcaagaacattaaacttcttcatctc 52432716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 262122 - 262242
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||      
T  262122 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcct 262220  T
Q  409 catgggcttaagtcctaacaat 430  Q
    ||||||||||||||||||||||    
T  262221 catgggcttaagtcctaacaat 262242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 30045448 - 30045566
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||      
T  30045448 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttg-ggttgggctctcct 30045546  T
Q  409 catgggcttaagtcctaaca 428  Q
    ||||||||||||||||||||    
T  30045547 catgggcttaagtcctaaca 30045566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 1701999 - 1701922
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||| |||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||| |||||||||||    
T  1701999 ttaggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactag 1701922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 32729553 - 32729630
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||| |||||||||||||||||| | ||||||||| | |||||| | ||| ||||||||||||||||||||||    
T  32729553 ttaggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactag 32729630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 524
Target Start/End: Original strand, 32342587 - 32342656
Alignment:
Q  455 tcaccattttaatttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcatctca 524  Q
    ||||||||||| |||||  ||||||||||||| ||||||||| |||| |||||||||||| |||||||||    
T  32342587 tcaccattttagttttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctca 32342656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 1702273 - 1702205
Alignment:
Q  314 agtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattgga 382  Q
    ||||||||||||||||||||||| |  |||||||||| |||||||| ||||||||||| | ||||||||    
T  1702273 agtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattgga 1702205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 20206524 - 20206481
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttctt 517  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  20206524 ttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 22100547 - 22100504
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttctt 517  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  22100547 ttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 28072191 - 28072126
Alignment:
Q  315 gtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattg 380  Q
    |||||||||| ||||||  |||||  |||||||||| |||||||  ||||||||||||||||||||    
T  28072191 gtcccacatcaagtagaaaaaagtgattgatgtggtacttaagctatgaggttctcccacctattg 28072126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 29141559 - 29141601
Alignment:
Q  344 atgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||| ||||| || ||||||||||||||||||||||||||    
T  29141559 atgtggtacttaaaccatgaggttctcccacctattggactag 29141601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 32047181 - 32047230
Alignment:
Q  475 tacaatcaattagcattttcatgtcaataacatcaaacttcttcatctca 524  Q
    |||| ||| ||| ||||||||| |||| ||||||||||||||||||||||    
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctca 32047230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 309 - 429
Target Start/End: Complemental strand, 8356329 - 8356210
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||        ||||||||||||      
T  8356329 ttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttg-ggttgggctctcct 8356231  T
Q  409 catgggcttaagtcctaacaa 429  Q
    |||||||||||||||||||||    
T  8356230 catgggcttaagtcctaacaa 8356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 3958465 - 3958388
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||| |||||||    
T  3958465 ttaggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactag 3958388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 23071746 - 23071867
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||| |||||||||||||||| |  |||||||||| ||||| || ||| ||||||||||||||||||||||        |||||||||||||     
T  23071746 ttaggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttg-ggttgggctctcat 23071844  T
Q  409 catgggcttaagtcctaacaatt 431  Q
    ||||||||||| |||||||||||    
T  23071845 catgggcttaaatcctaacaatt 23071867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 23072348 - 23072419
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattg 380  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||| || ||| ||||||||||||||||    
T  23072348 ttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatgaagttctcccacctattg 23072419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 13789615 - 13789497
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||||| |||  | ||||| ||||||||||| |||||||| || || ||||||||||||||||||||       |||||||||||||      
T  13789615 ttaggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactag-ttttttaggttgggctctcct 13789517  T
Q  409 catgggcttaagtcctaaca 428  Q
    | ||||||||||||||||||    
T  13789516 cttgggcttaagtcctaaca 13789497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 17944567 - 17944644
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||| ||| ||||||||    
T  17944567 ttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactag 17944644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 23072052 - 23072128
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggacta 385  Q
    |||||||||||||||||||||||||||| | ||| ||||| | ||||| || ||| |||||||||||||||||||||    
T  23072052 ttaggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggacta 23072128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 3958170 - 3958094
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||| ||||||||||||| |||||||||||| | ||||||   |||||||||||||||||| |||||||    
T  3958170 ttaggagtcccacgtcgagtagatcaa-gtacttgatgtgatacttaagttatgaggttctcccacctataggactag 3958094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 32139076 - 32139020
Alignment:
Q  227 ttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcat 283  Q
    |||||||||| ||||||||||||||||| |||  |||| ||||||||||| ||||||    
T  32139076 ttcatctattccattcaacatatgatatgtattatattcgttccataatcaaatcat 32139020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 37223838 - 37223913
Alignment:
Q  311 aggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||| |||||||| ||||| ||  ||| ||| |||||||| ||||  ||||||||||| ||||||||    
T  37223838 aggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactag 37223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 22593600 - 22593566
Alignment:
Q  226 cttcatctatttcattcaacatatgatatctatct 260  Q
    |||||||||||||||||||||| ||||||||||||    
T  22593600 cttcatctatttcattcaacatgtgatatctatct 22593566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 520
Target Start/End: Complemental strand, 29152396 - 29152350
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcat 520  Q
    ||||||||| |||  |||||||| |||||||||||||||||||||||    
T  29152396 ttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 22593645 - 22593597
Alignment:
Q  467 tttttcattacaatcaattagcattttcatgtcaataacatcaaacttc 515  Q
    |||||| ||||||||||||  ||||||||| |||| |||||||||||||    
T  22593645 tttttctttacaatcaattgtcattttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 12602 - 12723
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||| ||||||||||||||||        ||||||||||||      
T  12602 ttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttg-ggttgggctctcct 12700  T
Q  409 catgggcttaagtcctaacaatt 431  Q
    |||||||||| ||||||||||||    
T  12701 catgggcttaggtcctaacaatt 12723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 19987941 - 19988018
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987941 ttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactag 19988018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 19987647 - 19987724
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||||||| |  |||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987647 ttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactag 19987724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 8107532 - 8107455
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||||| | |||| |||||    
T  8107532 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactag 8107455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 7833857 - 7833796
Alignment:
Q  325 gagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||| ||||| ||||||||||| |||||| | ||||| ||||||||||| ||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactag 7833796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 38978715 - 38978788
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattgga 382  Q
    ||||||||||||||| |||||||| |||||  |||||||||| ||||| || ||||| ||| ||||||| ||||    
T  38978715 ttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatgga 38978788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 8107252 - 8107176
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggacta 385  Q
    |||| ||||||||||| |||| ||||||||  |||||  ||| |||||||| ||| ||||||||||| |||||||||    
T  8107252 ttagaagtcccacatcaagtatatcaaagtgtttgatccggtacttaagccatgatgttctcccacccattggacta 8107176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 25062362 - 25062446
Alignment:
Q  222 acttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattac 306  Q
    ||||||||||||  |||||| ||||| |||| |  ||||  |||||||||||||| |||| |||||||||||| | |||||||||    
T  25062362 acttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattac 25062446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 18930785 - 18930853
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccaccta 377  Q
    |||||||||| ||||||| || || ||||||||||||||||| ||||| || ||||  ||| |||||||    
T  18930785 ttaggagtcctacatcgactaaataaaagtacttgatgtggtacttaaaccatgagactcttccaccta 18930853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 25062496 - 25062544
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatct 522  Q
    ||||||||||||| | ||||||| |||| || |||||||||||||||||    
T  25062496 ttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 10567341 - 10567460
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||||||||| ||||| |||||||| ||||||||| | |||||| | |||||||||||||||||||| |||||        ||||||||||||      
T  10567341 ttaggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttg-ggttgggctctcct 10567439  T
Q  409 catgggcttaagtcctaacaa 429  Q
    |||||||||||||||||||||    
T  10567440 catgggcttaagtcctaacaa 10567460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 36975928 - 36976005
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||||||||||||||||||||  ||||||||||  ||||| | | ||| |||||||||| |||||||||    
T  36975928 ttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactag 36976005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 428
Target Start/End: Complemental strand, 15173570 - 15173456
Alignment:
Q  313 gagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcaccatg 412  Q
    |||||||||| || |||| | ||||| ||||||||||| ||||| || ||||| |||||||||| |||||||||        ||||||||||||  ||||    
T  15173570 gagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttg-ggttgggctctcctcatg 15173472  T
Q  413 ggcttaagtcctaaca 428  Q
    ||||||||||||||||    
T  15173471 ggcttaagtcctaaca 15173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 39570013 - 39569958
Alignment:
Q  331 atcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||| |||||||| || ||||| |||||||||||| ||||||||||||||||    
T  39570013 atcaaagtgcttgatgtagtacttaaaccttgaggttcttccacctattggactag 39569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 22587080 - 22587007
Alignment:
Q  313 gagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||  | |||||  ||||||| || |||||||| ||||| |||| |||||||||||||||    
T  22587080 gagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactag 22587007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 22780251 - 22780196
Alignment:
Q  467 tttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcatct 522  Q
    ||||| |||||||||| ||| |||||| || ||||||||||||||||| |||||||    
T  22780251 ttttttattacaatcagttaccatttttatttcaataacatcaaactttttcatct 22780196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 519
Target Start/End: Complemental strand, 14258964 - 14258902
Alignment:
Q  457 accattttaatttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttca 519  Q
    ||||||||||||||| |||| ||| | ||| ||||||||| |||| |||||||||||| ||||    
T  14258964 accattttaattttttattataattatttatcattttcatctcaaaaacatcaaactttttca 14258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 9441343 - 9441302
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggt 350  Q
    |||| ||||||||||||| || ||||||||||||||||||||    
T  9441343 ttagaagtcccacatcgattatatcaaagtacttgatgtggt 9441302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 36975239 - 36975316
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||||||||||||||||||||| |||||  ||||||| ||  ||||| | | ||| ||||||| |||||| |||||    
T  36975239 ttaggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactag 36975316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 10321691 - 10321615
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggacta 385  Q
    ||||||||||||||||   || || |||||  |||||||||| |||||||| ||||| ||||  |||||||||||||    
T  10321691 ttaggagtcccacatcagataaataaaagtgtttgatgtggtacttaagccatgaggctctcttacctattggacta 10321615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 17736823 - 17736775
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatct 522  Q
    |||||| |||||| ||||||||| ||||||| || ||||||||||||||    
T  17736823 ttacaaccaattaccattttcatctcaataatattaaacttcttcatct 17736775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 34074293 - 34074370
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||| || |||||||||||||||||| ||||||||||| | |||||| | ||||| ||||||||||||||||||||    
T  34074293 ttaggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactag 34074370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 34373715 - 34373638
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||| || |||||||||||||| ||||| |||||||| || |||||| | ||||||||||||||||||||||||||    
T  34373715 ttaggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactag 34373638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 34374007 - 34373934
Alignment:
Q  313 gagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||| || ||||||||||| ||||| ||||||||||| |||||||| ||||||||||| || |||||||||||    
T  34374007 gagtctcatatcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactag 34373934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 29093581 - 29093663
Alignment:
Q  224 ttcttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatacttgttattaagagtaaattac 306  Q
    ||||||||||  |||||||||||| |||| || ||||  || ||||||||||| ||||||||||| |||| || |||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatacttggtattgagggtaaattac 29093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 15937928 - 15937851
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||| |||||||||||| ||| || ||| | ||||||||||| |||||||| ||||  ||||||||||| ||||||||    
T  15937928 ttagaagtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactag 15937851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 32166704 - 32166655
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    |||| |||||||| ||||||||| |||| |||||||||||||||||||||    
T  32166704 ttactatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 9410528 - 9410598
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctatt 379  Q
    |||||| || ||||||||||||||||||||  |||||||  | ||||| || ||||||||||||| |||||    
T  9410528 ttaggaatctcacatcgagtagatcaaagtgtttgatgtaatacttaaaccatgaggttctcccatctatt 9410598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 22576727 - 22576677
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagcc 359  Q
    |||||||||||||||||||||||| ||| | |||||||||||  |||||||    
T  22576727 ttaggagtcccacatcgagtagataaaaatgcttgatgtggtagttaagcc 22576677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 21397239 - 21397316
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||| |||||||||| |||||  ||||||||||  |||| ||  | || ||||||||||| ||||||||    
T  21397239 ttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactag 21397316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 21791732 - 21791809
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    ||||||||||||| |||||||||| |||||  ||||||||||  |||| ||  | || ||||||||||| ||||||||    
T  21791732 ttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactag 21791809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 12736053 - 12736109
Alignment:
Q  467 tttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    |||||| ||||||| | ||| ||||| ||| | ||||||||||||||||||||||||    
T  12736053 tttttccttacaattagttaccatttccatcttaataacatcaaacttcttcatctc 12736109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 7400835 - 7400889
Alignment:
Q  307 tattaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagcctt 361  Q
    ||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||    
T  7400835 tattaggagtcccacatcgagtatatcaaagtgtttgatgtggtacttaagcctt 7400889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 13843724 - 13843672
Alignment:
Q  319 cacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcc 371  Q
    |||||||||||||||||||| ||| ||||||| |||||||| |||||||||||    
T  13843724 cacatcgagtagatcaaagtgcttaatgtggtacttaagccatgaggttctcc 13843672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 3870887 - 3870769
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactagnnnnnnnaggttgggctctcac 408  Q
    ||||||||| ||||||||||||||  || | ||||||||||| |||||||   |||| |||||||||  |||||||||        ||||||||||||      
T  3870887 ttaggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttg-ggttgggctctcct 3870789  T
Q  409 catgggcttaagtcctaaca 428  Q
    ||||||||||||||||||||    
T  3870788 catgggcttaagtcctaaca 3870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 19997182 - 19997105
Alignment:
Q  309 ttaggagtcccacatcgagtagatcaaagtacttgatgtggtgcttaagccttgaggttctcccacctattggactag 386  Q
    |||||| || ||||||||||| |||||| | ||||||||||| |||||| | | || |||||||||||||| ||||||    
T  19997182 ttaggaatctcacatcgagtatatcaaaatgcttgatgtggtacttaagtcctaagattctcccacctattagactag 19997105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 42091867 - 42091811
Alignment:
Q  467 tttttcattacaatcaattagcattttcatgtcaataacatcaaacttcttcatctc 523  Q
    |||||| ||||||| ||||| ||||||||| |||| |||||||||||| ||||||||    
T  42091867 tttttccttacaattaattatcattttcatctcaaaaacatcaaactttttcatctc 42091811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 2562969 - 2563029
Alignment:
Q  227 ttcatctatttcattcaacatatgatatctatcttatttgttccataatctaatcatactt 287  Q
    ||||||| ||||||||||||| |||| ||||| | ||||||| || |||| ||||||||||    
T  2562969 ttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatactt 2563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 54437812 - 54437860
Alignment:
Q  474 ttacaatcaattagcattttcatgtcaataacatcaaacttcttcatct 522  Q
    ||||||||| ||| |||||| || |||| ||||||||||||||||||||    
T  54437812 ttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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