View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_10 (Length: 351)
Name: NF12723_low_10
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 43336502 - 43336182
Alignment:
| Q |
15 |
tcacatgcaacgacatgacacaccttttaaccaccattattaagaaaactttcaatacaccaagagtcgatcgcatttagtcaaatcatcagctttggta |
114 |
Q |
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| T |
43336502 |
tcacatgcaacgacatgacacaccttttaaccaccattattaagaaaacttccaatacaccaagagtcgatcgcatgtaatcaaatcatcagctttggta |
43336403 |
T |
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| Q |
115 |
ttactgttggatcatgaaggttaaagaaagtataaatgtaaattaaggtcaactacaacaataacttgaatgctacatcttcactcaaattattagtata |
214 |
Q |
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| T |
43336402 |
ttactgttggatcatgaaggttaaagaaagtataaatgtaaattaaggtcaactac-----------gaatgctacatcttccctcaaatcattagtata |
43336314 |
T |
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| Q |
215 |
ttaaatatataaatctcttgactcaaatgtttgaaaataatcggttcatagactagacctcaaataaatcccctaatatgaaagacatgggagagaagaa |
314 |
Q |
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| T |
43336313 |
ttaaatatataaatctcttgactcaaatgtttgaaaatcatcggttcatagactagacctcaaataaatcccctaatatgaaagacatgggagagaagaa |
43336214 |
T |
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| Q |
315 |
ccccatacagattggaccactctacctatgct |
346 |
Q |
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| T |
43336213 |
ccccatacagattggaccactctacctatgct |
43336182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 43342109 - 43341898
Alignment:
| Q |
16 |
cacatgcaacgacatgacacaccttttaaccaccattattaagaaaactttcaatacaccaagagtcgatcgcatttagtcaaatcatcagctttggtat |
115 |
Q |
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| T |
43342109 |
cacatgcaatgacatgacacgtctttttacaaccattattaagaaaactttcaatac--caagagtcgatcacatttaatcaaatcatcaactctgatat |
43342012 |
T |
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| Q |
116 |
tactgttggatcatgaaggttaaagaaagtataaatgtaaattaaggtcaactacaacaataacttgaatgctacatcttcactcaaattattagtatat |
215 |
Q |
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| T |
43342011 |
cactgttgaattatgaaggttaaagaaagtttaacagtaaattaaaatcaaccataaaaatgacttgaatagtacatcttcact--aatcattagtatat |
43341914 |
T |
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| Q |
216 |
taaatatataaatctc |
231 |
Q |
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| T |
43341913 |
taaatatataaatctc |
43341898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 43341852 - 43341761
Alignment:
| Q |
234 |
gactcaaatgtttgaaaataatcggttcata--gactagacctcaaataaatcccctaatatgaaagacatgggagag-aagaaccccataca |
323 |
Q |
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| T |
43341852 |
gactcaaatgtttgaaatctatcgcttcatatagactaaacctcaaa-aaatcccctaatatgaaagacatgggagagaaagaaccccataca |
43341761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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