View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12723_low_13 (Length: 333)
Name: NF12723_low_13
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 26096373 - 26096681
Alignment:
| Q |
17 |
acaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096373 |
acaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttca |
26096472 |
T |
|
| Q |
117 |
ttcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096473 |
ttcgccgaagcttatcacggtggtaattcaagtgaataattaccggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgct |
26096572 |
T |
|
| Q |
217 |
attcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
26096573 |
gttcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttgaaaacgacttgg |
26096672 |
T |
|
| Q |
317 |
tcctatgct |
325 |
Q |
| |
|
||| ||||| |
|
|
| T |
26096673 |
tcccatgct |
26096681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 26084098 - 26084405
Alignment:
| Q |
17 |
acaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttca |
116 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
26084098 |
acaactaagacatagaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacatagtattcaacaactgctttca |
26084197 |
T |
|
| Q |
117 |
ttcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgct |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084198 |
ttcgcggaagcttatcacggtggtaattcacgtgaataataaccggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgct |
26084297 |
T |
|
| Q |
217 |
attcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
26084298 |
gttcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccaggatgtgatggatgaaagagttcctcgttgaaaacggcttgg |
26084397 |
T |
|
| Q |
317 |
tcctatgc |
324 |
Q |
| |
|
||| |||| |
|
|
| T |
26084398 |
tcccatgc |
26084405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 33 - 325
Target Start/End: Original strand, 26119676 - 26119968
Alignment:
| Q |
33 |
aacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
26119676 |
aacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcgtaagcttatc |
26119775 |
T |
|
| Q |
133 |
acggtggtaattcaagtgaataataactggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatat |
232 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26119776 |
acggtggtaattcaagtgaataataaccggtttcaatttactgaggttagcattgttcctcactgtcttgaaaagaactctgctattcataaaaagatat |
26119875 |
T |
|
| Q |
233 |
atatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgct |
325 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
26119876 |
atatccatagttcttttagcagcatgaagcccgtcataaccaggatatgatggatgaaagagttcctcgttgaaaacgacttggtcccatgct |
26119968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 26126317 - 26126624
Alignment:
| Q |
17 |
acaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttca |
116 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
26126317 |
acaactaagacacagaaacaaggttatcaaggtgtgccatccgagaaaggtttgagagcatcttggttcccattaacatagtattcaacaactgctttca |
26126416 |
T |
|
| Q |
117 |
ttcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgct |
216 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | || |
|
|
| T |
26126417 |
ttcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgagtttagcatcgttcctcactgtcttgaaaagaactttact |
26126516 |
T |
|
| Q |
217 |
attcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttgg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
26126517 |
attcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccaggatgcgacggataaaagagttcctcgttgaaaacgccttgg |
26126616 |
T |
|
| Q |
317 |
tcctatgc |
324 |
Q |
| |
|
||| |||| |
|
|
| T |
26126617 |
tcccatgc |
26126624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 52 - 325
Target Start/End: Original strand, 26064408 - 26064681
Alignment:
| Q |
52 |
gccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtga |
151 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
26064408 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
26064507 |
T |
|
| Q |
152 |
ataataactggtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttag |
251 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
26064508 |
ataattaccggtttcaatttactgagtttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtacatatccatagtccttttag |
26064607 |
T |
|
| Q |
252 |
aagcatgaagcccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgct |
325 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
26064608 |
cagcatgaagcccgtcataaccaggatgcgatggataaaagagttcctcgttaaaaacggcttggtcccatgct |
26064681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 62 - 324
Target Start/End: Original strand, 26035770 - 26036032
Alignment:
| Q |
62 |
aaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactg |
161 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
26035770 |
aaaggtttgagagcatcttgtttcccattgacataatattcgacaactgctttcattcgcggaagcttatcagggtggtaattcacgtgaacaattactg |
26035869 |
T |
|
| Q |
162 |
gtttcaatttactgaggttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
26035870 |
gtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttgctgttcataaagagatacatatccatagttcttctagcagcatgaag |
26035969 |
T |
|
| Q |
262 |
cccgtcataaccaggatgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgc |
324 |
Q |
| |
|
||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
26035970 |
cccttcataaccagggtgtgacggataaaatagttcctcgttgaaaacggcttggtcccatgc |
26036032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 26075504 - 26075686
Alignment:
| Q |
17 |
acaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattcaacaattgctttca |
116 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
26075504 |
acaactaagacatagaaacaaggttatcgatgtgtgccatcgggaaaaggtttcagagcatcttagttcccattaacataatattcaacaactgctttca |
26075603 |
T |
|
| Q |
117 |
ttcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgaggttagcatcgttcctcactgtc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26075604 |
ttcgccgaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgaggttagcatcgttcctcactgtc |
26075686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 6773247 - 6773326
Alignment:
| Q |
218 |
ttcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttc |
297 |
Q |
| |
|
||||||||||| || |||||||| ||||| || | ||||||||| || ||||||||||||||||| || ||||| ||||| |
|
|
| T |
6773247 |
ttcataaaaaggtacatatccattgttctctttgcagcatgaagtccatcataaccaggatgtgaagggtaaaaaagttc |
6773326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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