View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_low_14 (Length: 306)

Name: NF12723_low_14
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_low_14
NF12723_low_14
[»] chr1 (16 HSPs)
chr1 (12-296)||(13244659-13244943)
chr1 (11-257)||(30368245-30368491)
chr1 (36-178)||(13271474-13271616)
chr1 (51-179)||(12964052-12964180)
chr1 (43-262)||(13085911-13086130)
chr1 (36-255)||(13100812-13101030)
chr1 (36-257)||(13007009-13007230)
chr1 (36-257)||(13204268-13204489)
chr1 (36-187)||(13070338-13070489)
chr1 (11-187)||(13094278-13094454)
chr1 (11-187)||(13129707-13129883)
chr1 (11-187)||(13161400-13161576)
chr1 (36-179)||(19279330-19279473)
chr1 (11-262)||(13081002-13081253)
chr1 (36-129)||(13065375-13065468)
chr1 (100-178)||(13010661-13010739)
[»] chr6 (1 HSPs)
chr6 (56-145)||(31380253-31380342)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 13244659 - 13244943
Alignment:
Q  12 agatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagct 111  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244659 agatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagct 13244758  T
Q  112 tcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244759 tcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcg 13244858  T
Q  212 catgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtg 296  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244859 catgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtg 13244943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30368245 - 30368491
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||  ||||| |||||||   |||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||||||| || |||||||||||     
T  30368245 gagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 30368344  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttc 210  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||| |||| |||| |||||||||||||||||||| |  ||  ||||| ||||| ||     
T  30368345 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtccttt 30368444  T
Q  211 gcatgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga 257  Q
    | ||||| || ||||| || ||| | || | ||||||||||||||||    
T  30368445 gaatgaaacatggcttgaacgtcaaggttactaaaagatgcatttga 30368491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 13271616 - 13271474
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||  |||||||||||||||||||||    
T  13271616 attatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcag 13271517  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtca 178  Q
    ||||| | || |||||||||| |||| | ||||||||||||||    
T  13271516 cttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 12964052 - 12964180
Alignment:
Q  51 tcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttgtgga 150  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||  | |||||||||    
T  12964052 tcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtgga 12964151  T
Q  151 agtttcgcataaaggtggtggaaggtcac 179  Q
    |||||| |||| | |||||||||||||||    
T  12964152 agtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 13086130 - 13085911
Alignment:
Q  43 atgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttcttt 142  Q
    ||||||| |||| ||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||||||||| || |    
T  13086130 atgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctat 13086031  T
Q  143 gttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcgaagtcagt 242  Q
    ||| |||||||||| |||| | || |||||||||||  ||||||| |  |||  |||||||||  | |||||| | || || || || ||| |||| |||    
T  13086030 gttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagt 13085931  T
Q  243 aaaagatgcatttgatataa 262  Q
    |||||||| |||||||||||    
T  13085930 aaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 13101030 - 13100812
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| |||| |||||||||||||| || || ||| |||||||| |||||||||| ||||| ||||    
T  13101030 attatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcag 13100932  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    || |||||||   |||||||| |||| |||||||||||||||||||| |||| | ||    |||| ||||  ||| |||||| || ||||| |||||| |    
T  13100931 ctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaa 13100832  T
Q  236 agtcagtaaaagatgcattt 255  Q
    ||||| ||||||||||||||    
T  13100831 agtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 13007230 - 13007009
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||| || || ||| |||||||| |||||||||| ||||| ||||    
T  13007230 attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcag 13007131  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    |  |||||||    ||||||| |||||||||||||| |||||||||| |||| | ||    |||| ||||  ||| |||||| || ||||| |||||  |    
T  13007130 cagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaa 13007031  T
Q  236 agtcagtaaaagatgcatttga 257  Q
    ||||| ||||||||||||||||    
T  13007030 agtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 257
Target Start/End: Complemental strand, 13204489 - 13204268
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||| | || ||||||||||| ||| |||||||||| ||||| ||||    
T  13204489 attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag 13204390  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaagcacggcttaaaggtcga 235  Q
    || |||||||   ||| |||| ||||||| | |||||||||||||||||||| |  |  | |||| ||||  ||| ||||||  | || ||||||||  |    
T  13204389 ctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaa 13204290  T
Q  236 agtcagtaaaagatgcatttga 257  Q
    ||||| ||||||||||||||||    
T  13204289 agtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 13070338 - 13070489
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| |||| || ||||||||||||||||| |||||| ||||||| ||||||||| | || ||||||||||| ||| |||||||||| ||||| ||||    
T  13070338 attatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag 13070437  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    || |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13070438 ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13094454 - 13094278
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| ||||||||||||||||| |||||  |||| || |||| |||||| || |||||| ||||     
T  13094454 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagt 13094355  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||||||||||    
T  13094354 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13129883 - 13129707
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| |||||||||||| |||| |||||  |||| || |||| |||||| || |||||||||||     
T  13129883 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagt 13129784  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13129783 ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13161576 - 13161400
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| ||| | ||| ||||  |||||| ||||||| ||||||||||||||| | |||||  |||| || |||| |||||| || |||||||||||     
T  13161576 gagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagt 13161477  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 187  Q
    ||| |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||||    
T  13161476 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 19279330 - 19279473
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 135  Q
    |||||| ||||||| || |||||||||||||| || ||||||||||| ||||| ||| | || |||||| |||  ||| |||||||||||||||||||||    
T  19279330 attatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcag 19279429  T
Q  136 cttctttgttgtggaagtttcgcataaaggtggtggaaggtcac 179  Q
    || || | || ||||||||||||||| |||| ||||||||||||    
T  19279430 ctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 13081002 - 13081253
Alignment:
Q  11 gagatggacatcagcgagaggagggattataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagc 110  Q
    |||||||| |||||  ||||||   |||||| | || |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||| ||||     
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  111 ttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttc 210  Q
    ||  ||||||||||||||||||||||| |  | || |  ||||||| |||  ||||||||||||||||| |  |||  |  ||   ||||||| || |||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttc 13081201  T
Q  211 gcatgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa 262  Q
    ||||| | || ||||| |||||| || |  ||||||||||||||||||||||    
T  13081202 gcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 13065375 - 13065468
Alignment:
Q  36 attataaatgtaccgtcttacaagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatgg 129  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||| | || |||||| | | ||||||| ||||||| ||||    
T  13065375 attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 13065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 13010739 - 13010661
Alignment:
Q  100 aagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtca 178  Q
    |||||||||| ||| ||| |||||| ||||| ||||||  |||||| ||||| ||||||||| | ||||||||||||||    
T  13010739 aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 31380253 - 31380342
Alignment:
Q  56 caagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgtt 145  Q
    |||||||||| | |||||| |||| ||  ||||||||||||| ||||||||||| ||| ||||||| || |||  ||| |||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgtt 31380342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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