View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_15 (Length: 302)
Name: NF12723_low_15
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 7242288 - 7241987
Alignment:
| Q |
1 |
ccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttcagacgttccacttttaccata |
100 |
Q |
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| T |
7242288 |
ccgtggaggctaatgtcattgtaccgaggtttttggataacagaatcacaaggacaacgactaggacgtggattagttcagacgttccacttttaccata |
7242189 |
T |
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| Q |
101 |
tgctaaatggtttttcatttcagggcatatcagcaaggttctgtattggcttcagcttctttctgcaacagcttgcgtggttctgtcttcgacaaagctc |
200 |
Q |
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| T |
7242188 |
tgctaaatggtttttcatttcagggcatatcagcaaggttctgtattggcttcagcttctttctgcaacagcttgcgtggttctgtcttcgacaaagctc |
7242089 |
T |
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| Q |
201 |
atcaggcataattatggagtgattgccaagggagataccgataagaggaaccgcgaatctgctctcgacatcttttatgcattggctcttgcagaagctt |
300 |
Q |
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| T |
7242088 |
atcaggcataattatggagtgattgccaagggagataccgataagaggaaccgcgaatctgctctcgacatcttttatgcattggctcttgcagaagctt |
7241989 |
T |
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| Q |
301 |
tg |
302 |
Q |
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| T |
7241988 |
tg |
7241987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 302
Target Start/End: Original strand, 48730825 - 48731078
Alignment:
| Q |
49 |
caaggacaacgactaggacgtggattagttcagacgttccacttttaccatatgctaaatggtttttcatttcagggcatatcagcaaggttctgtattg |
148 |
Q |
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| T |
48730825 |
caaggacaccaactaggatgtgggttagctcagaagttccattattaccttatgctaaatggttttttcttttaaggcatgtaagtagaattctctattg |
48730924 |
T |
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| Q |
149 |
gcttcagcttctttctgcaacagcttgcgtggttctgtcttcgacaaagctcatcaggcataattatggagtgattgccaagggagataccgataagagg |
248 |
Q |
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| T |
48730925 |
gcttcaacttatttctgcaacagctagtgtggttctctcatcaatgaagctagtaaggcatgattttggagaggtaacgaacagagacaccggtaagagg |
48731024 |
T |
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| Q |
249 |
aaccgcgaatctgctctcgacatcttttatgcattggctcttgcagaagctttg |
302 |
Q |
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| T |
48731025 |
aactgtcgatctgctctatataccttttattccttggctcttgcagaagctttg |
48731078 |
T |
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