View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_18 (Length: 277)
Name: NF12723_low_18
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 118 - 268
Target Start/End: Complemental strand, 592666 - 592511
Alignment:
| Q |
118 |
tccttttaattatcactatattcctttcttttgccaaaattaagcaattatttcattcattatattcattttatttgctcacgta-----cagtgtactc |
212 |
Q |
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| T |
592666 |
tccttttaattatcactatattcctttgttttgccaaaattaagcaattatttcattcattatattcattttatttgctcacgtacagtacagtgtactc |
592567 |
T |
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| Q |
213 |
ataatggatatttattcgttttgctaaatcaatgataaccagttaaccacctttgc |
268 |
Q |
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| T |
592566 |
ataatcgatatttattcgttttgctaaatcaatgataaccagttaaccacctttgc |
592511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 592777 - 592691
Alignment:
| Q |
18 |
ttgttgtccaattcaatccaagatttgcagcaacaccttgcgcnnnnnnnnnttattctaaattatatgtcattttatgatatcaata |
105 |
Q |
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| T |
592777 |
ttgttgtccaattcaatctaggatttgcagcaacaccttgcgcaaaaaaaaaatgttct-aattatatgtcattttatgatatcaata |
592691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 33592586 - 33592678
Alignment:
| Q |
156 |
attaagcaattatttcattcattatattcattttatttgctcacg--tacagtgtactcataatggatatttattcgttttgctaaatcaatgataacc |
252 |
Q |
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| T |
33592586 |
attaaacaattatttcattcatt-----cattttatttgctcacgggtgcgttgtacttgtaatggatatttatgc-ttttgctaaatcaatgataacc |
33592678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 35890943 - 35891007
Alignment:
| Q |
160 |
agcaattatttcattcattatattcattttatttgctcacgtacagtgtactcataatggatatttattc |
229 |
Q |
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| T |
35890943 |
agcaattatttcattcatt-----cattttatttgctcacgaacaatgtacttataatgaatatttattc |
35891007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 53588675 - 53588634
Alignment:
| Q |
187 |
tttatttgctcacgtacagtgtactcataatggatatttatt |
228 |
Q |
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| T |
53588675 |
tttatttgctcacgtacaatgtacttataatggatatttatt |
53588634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 53588140 - 53588108
Alignment:
| Q |
218 |
ggatatttattcgttttgctaaatcaatgataa |
250 |
Q |
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| T |
53588140 |
ggatatttattcattttgctaaatcaatgataa |
53588108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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