View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_19 (Length: 253)
Name: NF12723_low_19
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 5666899 - 5667053
Alignment:
| Q |
78 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccctacgaggttgtctcacttgtgttctaaaaacaaggattnnnnnnntctcaagtct |
177 |
Q |
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| T |
5666899 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccctacgaggttgtctcacttgtgttctaaaaacaaggattaaaaaaatctcaagtct |
5666998 |
T |
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| Q |
178 |
agttaactcatttagaaatattttatagattaatttgttataaaaatgagttcaa |
232 |
Q |
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| T |
5666999 |
agttaactcatttagaaatattttatagattaatttgttataaaaatgagttcaa |
5667053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5666807 - 5666865
Alignment:
| Q |
17 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
75 |
Q |
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| T |
5666807 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
5666865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12846771 - 12846827
Alignment:
| Q |
17 |
gagagaagttgaaagggttagaaaggagagatagaacagaaattgataaggtgtgggag |
75 |
Q |
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| T |
12846771 |
gagagaagttgaaggagttagaaagaagaga--gaacagaaattgataaggtgtgggag |
12846827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 44122706 - 44122664
Alignment:
| Q |
79 |
cacggtgggagatctattaagctctcctaccctagaaggcgcc |
121 |
Q |
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| T |
44122706 |
cacggtgggagacctattaagctctcccaccctagaaggcgcc |
44122664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 12846865 - 12846903
Alignment:
| Q |
83 |
gtgggagatctattaagctctcctaccctagaaggcgcc |
121 |
Q |
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| T |
12846865 |
gtgggagatctattaagctctcccaccatagaaggcgcc |
12846903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 3484758 - 3484800
Alignment:
| Q |
33 |
gttagaaaggagagatagaacagaaattgataaggtgtgggag |
75 |
Q |
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| T |
3484758 |
gttagaaaagagagagagaacagaaattgataaggtgtgggag |
3484800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 28225044 - 28225088
Alignment:
| Q |
78 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccc |
122 |
Q |
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|||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
28225044 |
tcacggtgagagacctattaagctctcccaccctagaaggcgccc |
28225088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 630255 - 630290
Alignment:
| Q |
194 |
aatattttatagattaatttgttataaaaatgagtt |
229 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
630255 |
aatattttatagattaatttgttataaaaatcagtt |
630290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 32568154 - 32568194
Alignment:
| Q |
33 |
gttagaaaggagagatagaacagaaattgataaggtgtgggag |
75 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32568154 |
gttagaaaggagaga--gaacagaaattgataaggtgtgggag |
32568194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 32568228 - 32568273
Alignment:
| Q |
78 |
tcacggtgggagatctattaagctctcctaccctagaaggcgccct |
123 |
Q |
| |
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|||| |||||||| |||||||||||||| |||||||||| |||||| |
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| T |
32568228 |
tcacagtgggagacctattaagctctcccaccctagaagacgccct |
32568273 |
T |
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