View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_low_2 (Length: 524)

Name: NF12723_low_2
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_low_2
NF12723_low_2
[»] chr2 (3 HSPs)
chr2 (11-510)||(39090587-39091084)
chr2 (165-210)||(39068709-39068754)
chr2 (157-222)||(44488003-44488068)
[»] chr5 (5 HSPs)
chr5 (265-395)||(2376112-2376240)
chr5 (167-215)||(16752505-16752553)
chr5 (167-205)||(29554882-29554920)
chr5 (165-206)||(22901978-22902019)
chr5 (167-203)||(6237722-6237758)
[»] chr3 (2 HSPs)
chr3 (167-209)||(47039443-47039485)
chr3 (165-206)||(52119395-52119436)
[»] chr1 (4 HSPs)
chr1 (165-210)||(19262908-19262953)
chr1 (167-210)||(5031157-5031200)
chr1 (167-206)||(12500942-12500981)
chr1 (165-210)||(26329123-26329168)
[»] chr7 (3 HSPs)
chr7 (167-210)||(42336085-42336128)
chr7 (165-210)||(39926539-39926584)
chr7 (165-210)||(45200208-45200253)
[»] chr8 (6 HSPs)
chr8 (165-206)||(9635054-9635095)
chr8 (165-206)||(20275190-20275231)
chr8 (165-206)||(21061817-21061858)
chr8 (165-214)||(23159452-23159501)
chr8 (182-214)||(33763826-33763858)
chr8 (170-202)||(35700401-35700433)
[»] chr4 (2 HSPs)
chr4 (182-214)||(29910472-29910504)
chr4 (182-214)||(49952689-49952721)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 39091084 - 39090587
Alignment:
Q  11 catagggcaccatcaacgctatggattctagccatatatgatcatttgaggaagtattctttccatatttaccgtctaacctttgagtttgttcaaaata 110  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39091084 catagagcaccatcaacgctatggattctagccatacatgatcatttgaggaagtattctttccatatttactgtctaacctttgagtttgttcaaaata 39090985  T
Q  111 atgttattctcattttgtataattgatcattaacatgnnnnnnnnngtggatgtggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||| ||||  |||||||||||||||||||         ||||||| |||||||| |||||| ||||||| |||||||||||||| |||||||    
T  39090984 atgttattctcgtttttcataattgatcattaacatgttttttt--gtggatggggttcgaatcccgaactttgcatatattatgcattgtctttatcaa 39090887  T
Q  211 ttgaagtaaactatcattcacattcttaggtgcagaaagtagaagaaactagacacaaggaaaaatgcacattggaggaagaaataaagacgcatcataa 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090886 ttgaagtaaactatcattcacattcttaggtgtagaaagtagaagaaactagacacaaggaaaaatgcacattggaggaagaaataaagacgcatcataa 39090787  T
Q  311 ctttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatatatgtaataacacctttctcaactatttgcagtcgaatctaaagatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39090786 ctttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatatatgtaataacacctttctcaactatttgcagtcgaatctaaagatt 39090687  T
Q  411 attccttcaacaacaaaggataagtagaaatcccgttttgcaccctcttgttttccaataaataatgtattacttaattatctaatttcataaattaatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39090686 attccttcaacaacaaaggataagtagaaatcccgttttgcaccctcttgttttccaataaataatgtattacttaattatctaatttcacaaattaatg 39090587  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 39068709 - 39068754
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||| ||||||| || |||||| ||||||||||||||||||||||    
T  39068709 ggttcaaaccccggatcttgcatatattatgcattgtccttatcaa 39068754  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 44488003 - 44488068
Alignment:
Q  157 gtggatgtggttcgaaccccgaattttgcatgtattatgcattgtccttatcaattgaagtaaact 222  Q
    |||||||||||| |||| |||||  || ||| |||||||||||||||||| ||| |||| ||||||    
T  44488003 gtggatgtggtttgaactccgaaccttacatatattatgcattgtccttaccaactgaactaaact 44488068  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 395
Target Start/End: Original strand, 2376112 - 2376240
Alignment:
Q  265 acaaggaaaaatgcacattggaggaagaaataaagacgcatcataactttttcaattggttctttgatggccaaacttttttgtggtccttcaagcatat 364  Q
    ||||||||||||||||| | ||||| |||||||| | | ||| |||||||||||||| ||||||   |||||||| |||| | |||| ||||||||| ||    
T  2376112 acaaggaaaaatgcacaattgaggatgaaataaaaaggtatcctaactttttcaatttgttcttcagtggccaaaattttgt-tggttcttcaagcacat 2376210  T
Q  365 atgtaataacacctttctcaactatttgcag 395  Q
    | |  ||||||| |||||| |||||||||||    
T  2376211 acg-cataacacatttctctactatttgcag 2376240  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 16752505 - 16752553
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaattgaa 215  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| ||||    
T  16752505 ttcgaaccccgaatcttgcatatattatgcattgtccttaccaactgaa 16752553  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 29554920 - 29554882
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcctt 205  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  29554920 ttcgaaccccgaaccttgcatgtattatgcattgtcctt 29554882  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 22902019 - 22901978
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||| |||||| ||||||| ||||||||||||||||||    
T  22902019 ggttcgaatcccgaactttgcatatattatgcattgtcctta 22901978  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 6237722 - 6237758
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcc 203  Q
    |||||||||||||| |||||| |||||||||||||||    
T  6237722 ttcgaaccccgaatcttgcatatattatgcattgtcc 6237758  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 47039485 - 47039443
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatca 209  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  47039485 ttcgaaccccgaactttgcatatattatgcattgtccttatca 47039443  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 52119436 - 52119395
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||||||||||  |||||| ||||||||||||||||||    
T  52119436 ggttcgaaccccgaaccttgcatatattatgcattgtcctta 52119395  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 19262908 - 19262953
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  19262908 ggttcgaaccccgaactttgcatatgttatgcattgtccttatcaa 19262953  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 5031157 - 5031200
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||||| |||| || ||||||||||||||||||||||    
T  5031157 ttcgaaccccgaactttgtatatattatgcattgtccttatcaa 5031200  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 12500981 - 12500942
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  12500981 ttcgaaccccgaactttgcatatattatgcattgtcctta 12500942  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 26329123 - 26329168
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||| |||||  |||||||||||||||||||| ||||||||    
T  26329123 ggttcgaactccgaaccttgcatgtattatgcattgttcttatcaa 26329168  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 42336128 - 42336085
Alignment:
Q  167 ttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||||| |  |||||||||||||||||||||||||||||    
T  42336128 ttcgaaccccggaccttgcatgtattatgcattgtccttatcaa 42336085  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 39926539 - 39926584
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||    
T  39926539 ggtttgaaccccgaacattgcatatattatgcattgtccttatcaa 39926584  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 45200253 - 45200208
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaa 210  Q
    ||||||||| ||  ||||||||||||||||||||||||| ||||||    
T  45200253 ggttcgaactccagattttgcatgtattatgcattgtccatatcaa 45200208  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 9635054 - 9635095
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  9635054 ggttcgaaccccgaaccttgcatgtattatgcattatcctta 9635095  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 20275190 - 20275231
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  20275190 ggtttgaaccccgaaccttgcatgtattatgcattgtcctta 20275231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 21061817 - 21061858
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtcctta 206  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  21061817 ggtttgaaccccgaaccttgcatgtattatgcattgtcctta 21061858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 23159501 - 23159452
Alignment:
Q  165 ggttcgaaccccgaattttgcatgtattatgcattgtccttatcaattga 214  Q
    |||| ||||||||||| |||||| ||||||||||||||| ||| ||||||    
T  23159501 ggtttgaaccccgaatcttgcatatattatgcattgtccatatgaattga 23159452  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 33763858 - 33763826
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  33763858 ttgcatatattatgcattgtccttatcaattga 33763826  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 35700401 - 35700433
Alignment:
Q  170 gaaccccgaattttgcatgtattatgcattgtc 202  Q
    |||||||||||||||||| ||||||||||||||    
T  35700401 gaaccccgaattttgcatatattatgcattgtc 35700433  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 29910504 - 29910472
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  29910504 ttgcatatattatgcattgtccttatcaattga 29910472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 49952689 - 49952721
Alignment:
Q  182 ttgcatgtattatgcattgtccttatcaattga 214  Q
    |||||| ||||||||||||||||||||||||||    
T  49952689 ttgcatatattatgcattgtccttatcaattga 49952721  T

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