View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12723_low_21 (Length: 245)

Name: NF12723_low_21
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12723_low_21
NF12723_low_21
[»] chr5 (1 HSPs)
chr5 (1-231)||(36199285-36199515)
[»] chr7 (2 HSPs)
chr7 (1-208)||(28449458-28449665)
chr7 (109-164)||(12635951-12636006)
[»] chr1 (2 HSPs)
chr1 (2-208)||(48675133-48675339)
chr1 (96-169)||(41662527-41662600)
[»] chr2 (5 HSPs)
chr2 (58-161)||(410494-410600)
chr2 (113-168)||(996740-996795)
chr2 (110-196)||(821405-821491)
chr2 (110-170)||(973725-973785)
chr2 (110-164)||(1403805-1403859)
[»] chr3 (2 HSPs)
chr3 (114-160)||(43360019-43360065)
chr3 (110-164)||(45810203-45810257)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36199285 - 36199515
Alignment:
Q  1 aaagaacaagaaagttgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36199285 aaagaacaagaaaattgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcgggacttcgcttttgtagacctac 36199384  T
Q  101 aacacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199385 aacacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaagga 36199484  T
Q  201 actatccttaactccaatggcatcaaaaact 231  Q
    ||||||||||| |||||||||||||||||||    
T  36199485 actatccttaattccaatggcatcaaaaact 36199515  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28449665 - 28449458
Alignment:
Q  1 aaagaacaagaaagttgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctac 100  Q
    |||| |||| ||||||||||  | |||| |||  |||||||||  || |||||| |||||| |||||||||||||| |||||| || |||||||||||||    
T  28449665 aaaggacaacaaagttgggtaaacccaacatctgctccacaatgcctctcattacatcttacaacttgcactattcgggactttgcatttgtagacctac 28449566  T
Q  101 aacacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaagga 200  Q
    || | ||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||| |||    
T  28449565 aaaatgacattatgctagcaagatatattcttaataatgcaagagttttacaaaccatgatgatatggagtgataaagaacaacctcaaatagaaaggga 28449466  T
Q  201 actatcct 208  Q
    | ||||||    
T  28449465 attatcct 28449458  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 12635951 - 12636006
Alignment:
Q  109 cttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 164  Q
    |||||| ||||||| |||||| | || |||||||||||||||||||| ||||||||    
T  12635951 cttatgctagcaaggtatattttgaagaatgcaagagttttacaaaccatgacaat 12636006  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 48675339 - 48675133
Alignment:
Q  2 aagaacaagaaagttgggtggatccaaaatccactccacaatttctttcattatatcttagaacttgcactattcaggacttcgcttttgtagacctaca 101  Q
    |||||||||||||||||||||| || || | | |||||||||  |||  ||||| ||||||||| |||||||||| ||||||  | |||   ||||||||    
T  48675339 aagaacaagaaagttgggtggaccctaagttccctccacaatgccttcaattatctcttagaacctgcactattcgggactttacctttagtgacctaca 48675240  T
Q  102 acacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaaaggaa 201  Q
     ||  |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||    
T  48675239 gcataatattatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaa 48675140  T
Q  202 ctatcct 208  Q
     ||||||    
T  48675139 ttatcct 48675133  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 41662600 - 41662527
Alignment:
Q  96 cctacaacacgaccttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatgga 169  Q
    ||||||| |||| |||||| ||||||| ||| || | || |||||||||||||||||||| |||| ||| ||||    
T  41662600 cctacaagacgagcttatgctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatctgga 41662527  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 410494 - 410600
Alignment:
Q  58 cttagaacttgcactattcaggacttcgcttttgtagacctacaacacg---accttatgttagcaagatatattctaaataatgcaagagttttacaaa 154  Q
    |||| |||||||||||||| ||||||||| |||| || |||||||||     || |||||||||||| || ||||||||| |||||||||||||||| ||    
T  410494 cttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaa 410593  T
Q  155 ctatgac 161  Q
    |||||||    
T  410594 ctatgac 410600  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 996795 - 996740
Alignment:
Q  113 tgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatgg 168  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||    
T  996795 tgttagcaagatatattctaaagaatgcaagacttttacaaaccatgaaaatatgg 996740  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 821405 - 821491
Alignment:
Q  110 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggagtgacaaagaacaacctcaaatagaaa 196  Q
    |||||||||||| || |||||| || ||||| ||||||||| ||||||||||||| |||||  ||||  ||||| || |||||||||    
T  821405 ttatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaa 821491  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 973785 - 973725
Alignment:
Q  110 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggag 170  Q
    ||||||||||||||| ||||||  | || |||||||||||||||||||||| ||| |||||    
T  973785 ttatgttagcaagatttattctggagaacgcaagagttttacaaactatgaaaatctggag 973725  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 1403805 - 1403859
Alignment:
Q  110 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 164  Q
    ||||||||||||| | ||||||  ||||||||||||||||| |||||||| ||||    
T  1403805 ttatgttagcaaggtttattctggataatgcaagagttttagaaactatgtcaat 1403859  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 43360019 - 43360065
Alignment:
Q  114 gttagcaagatatattctaaataatgcaagagttttacaaactatga 160  Q
    |||||||| ||| ||||| ||||||||||||||||| ||||||||||    
T  43360019 gttagcaacatacattcttaataatgcaagagttttgcaaactatga 43360065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 45810257 - 45810203
Alignment:
Q  110 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaat 164  Q
    ||||||||||||| | |||||| || ||||||| ||||||| |||||||||||||    
T  45810257 ttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaat 45810203  T

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