View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_23 (Length: 239)
Name: NF12723_low_23
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_23 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40782128 - 40782343
Alignment:
| Q |
1 |
aatagtgcactcatgtttgtttacatttagattttgggactgtgagttggatttcaatgtgatttctcttccctagccatgatccatctcaccagagtct |
100 |
Q |
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| T |
40782128 |
aatagtgcactcatgtttgtttacatttagattttgggactgtgagttggatttcaatgtgatttctcttccctagccatgatccatctcaccagagtct |
40782227 |
T |
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| Q |
101 |
gttcaatccagagtccagacataaatattatatatcgtctctgaaatgatacctcatgtctaagaaaaacatgttcacttttgcaattgaattacattct |
200 |
Q |
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| T |
40782228 |
gttcaa-------tccagacataaatattatatatcgtttctgaaatgatacctcatgtctaagaaaaacatgttcacttttgcaattgaattacattct |
40782320 |
T |
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| Q |
201 |
taagcaacacattcgtatgaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40782321 |
taagcaacacattcgtatgaatg |
40782343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10174 - 10391
Alignment:
| Q |
1 |
aatagtgcactcatgtttgtttacatttagattttgggactgtgagttggatttcaatgtgatttctcttccctagccatgatccatctcaccagagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10174 |
aatagtgcactcatgtttgtttacatttagattttgggactgtgagttggatttcaatgtgatttctcttccctagccatgatccatctcaccagagtct |
10273 |
T |
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| Q |
101 |
gttcaatccagagtccagacataaatattatatatcgtctctgaaatgatacctcatgtctaag--aaaaacatgttcacttttgcaattgaattacatt |
198 |
Q |
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| T |
10274 |
gttcaa-------tccagacataaatattatatatcgtttctgaaatgatacctcatgtctaagaaaaaaacatgttcacttttgcaattgaattacatt |
10366 |
T |
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| Q |
199 |
cttaagcaacacattcgtatgaatg |
223 |
Q |
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| T |
10367 |
cttaagcaacacattcgtatgaatg |
10391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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