View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_26 (Length: 224)
Name: NF12723_low_26
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 5401451 - 5401246
Alignment:
| Q |
3 |
gaaatcatcggtaagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgt |
102 |
Q |
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| T |
5401451 |
gaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaatttctattacacattagaggatatcttgt |
5401352 |
T |
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| Q |
103 |
tcgaagaggttagtgcattacacattattctcattagccttttatttcaatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401351 |
tcgaagaggttagtgcattacacattattctcattagccttttatttcaatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcc |
5401252 |
T |
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| Q |
203 |
tttcat |
208 |
Q |
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|||||| |
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| T |
5401251 |
tttcat |
5401246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 5395298 - 5395187
Alignment:
| Q |
9 |
atcggtaagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgttcgaag |
108 |
Q |
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|||||||||||||| | || |||||||||||||| ||| | |||||||| || | |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
5395298 |
atcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggatatcttgttagaag |
5395199 |
T |
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| Q |
109 |
aggttagtgcat |
120 |
Q |
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||||| |||||| |
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| T |
5395198 |
aggttggtgcat |
5395187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 5391495 - 5391383
Alignment:
| Q |
1 |
ttgaaatcatcggtaagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctattacacattagaggatatctt |
100 |
Q |
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||||||| ||||||||||||| || || |||||||| ||||| ||| | |||||||| || | |||||||||||||||| ||||| |||||||||||| |
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| T |
5391495 |
ttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggatatctt |
5391396 |
T |
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| Q |
101 |
gttcgaagaggtt |
113 |
Q |
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| | ||||||||| |
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| T |
5391395 |
gctagaagaggtt |
5391383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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