View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_30 (Length: 206)
Name: NF12723_low_30
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 40276543 - 40276714
Alignment:
| Q |
20 |
ataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcac |
119 |
Q |
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| T |
40276543 |
ataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcac |
40276642 |
T |
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| Q |
120 |
gcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
191 |
Q |
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| T |
40276643 |
gcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
40276714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39625274 - 39625429
Alignment:
| Q |
31 |
aatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaac |
130 |
Q |
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| T |
39625274 |
aatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaa |
39625373 |
T |
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| Q |
131 |
cctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
186 |
Q |
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| T |
39625374 |
cctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 39634824 - 39634979
Alignment:
| Q |
31 |
aatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaac |
130 |
Q |
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| T |
39634824 |
aatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaa |
39634923 |
T |
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| Q |
131 |
cctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
186 |
Q |
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| T |
39634924 |
cctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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