View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_4 (Length: 435)
Name: NF12723_low_4
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 229 - 425
Target Start/End: Original strand, 39396387 - 39396584
Alignment:
| Q |
229 |
tgcgcccacaaagatacaaagaaaacctctcatacatacacaataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcaca |
328 |
Q |
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| T |
39396387 |
tgcgcccacaaagatacaaagaaaacccctcatacatacacaataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcaca |
39396486 |
T |
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| Q |
329 |
ct-aaacctgccaacacatcacaacatccattacacagcctacaattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
425 |
Q |
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| T |
39396487 |
ctcaaacctgccaacacatcacaacatccataacacagcctacaattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
39396584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 39396178 - 39396302
Alignment:
| Q |
20 |
tcatcaacttgaagctagattgaaagaacaacttgctcatgacgaggcaataaagaaaattcctataaaaatcctagacaattatatttatttttgaact |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396178 |
tcatcaacttgaagccagattgaaagaacaacttgctcatgacgaggcaataaagaaaattcctataaaaatcctagacaattatatttatttttgaact |
39396277 |
T |
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| Q |
120 |
ccaattttatcaggtaaccatcatt |
144 |
Q |
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|||| || ||||||||||||||||| |
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| T |
39396278 |
ccaacttcatcaggtaaccatcatt |
39396302 |
T |
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