View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_6 (Length: 426)
Name: NF12723_low_6
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 7241971 - 7241563
Alignment:
| Q |
1 |
aaggcttattgggagtggaaattaagctactgtgaactattggatgaggttaacaaagagtgtgagttaggaccgtcagggatggtttctatcaggagat |
100 |
Q |
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| T |
7241971 |
aaggcttattgggagtggaaattaagctactgtgaactattggatgaggttaacaaagagtgtgagttaggaccgtcagggatggtttctatcaggagat |
7241872 |
T |
|
| Q |
101 |
tcttttatgatgcttattcaaggtgtgtcaatgggagtatctttgatggattgaaaatggatatggtgtcttttgctatggatcttttggcctcaaactc |
200 |
Q |
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| T |
7241871 |
tcttttatgatgcttattcaaggtgtgtcaatgggagtatctttgatggattgaaaatggatatggtgtcttttgctatggatcttttggcctcaaactc |
7241772 |
T |
|
| Q |
201 |
acctgatgagaagctcattggagcgagaattcttcgacaatttgctaacagtgagaggttttcagacgatacacttcaaaagattggaatttctatatct |
300 |
Q |
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| T |
7241771 |
acctgatgagaagctcattggagcgagaattcttcgacaatttgctaacagtgagaggttttcagacgatacacttcaaaagattggaatttctatatct |
7241672 |
T |
|
| Q |
301 |
ttggtggagagactagttgagatgttgaattggacagaccacaaggaggaagaaattaggctgtctgctgcggagattttatcaaaactagcaggcaaga |
400 |
Q |
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| T |
7241671 |
ttggtggagagactagttgagatgttgaattggacagaccacaaggaggaagaaattaggatgtctgctgcggagattttatcaaaactagcaggcaaga |
7241572 |
T |
|
| Q |
401 |
agcagaact |
409 |
Q |
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| T |
7241571 |
agcagaact |
7241563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 4 - 391
Target Start/End: Original strand, 48739145 - 48739531
Alignment:
| Q |
4 |
gcttattgggagtggaaattaagctactgtgaactattggatgaggttaacaaagagtgtgagttaggaccgtcagggatggtttctatcaggagattct |
103 |
Q |
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||||||||||| || || ||||||| ||| |||||| || |||||||| | | |||||| ||||| || || || ||||||| ||||| |||||| |
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| T |
48739145 |
gcttattgggaatgacaagtaagctattgtaaactataagaagaggttaatgatgggtgtgatttagggccatccggaatggtttg-atcagacgattct |
48739243 |
T |
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| Q |
104 |
tttatgatgcttattcaaggtgtgtcaatgggagtatctttgatggattgaaaatggatatggtgtcttttgctatggatcttttggcctcaaactcacc |
203 |
Q |
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|||||||||||||||| || || |||||||| || || |||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||||| ||||| |
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| T |
48739244 |
tttatgatgcttattcgagatgcgtcaatggaagcatatttgatggtttgaaaatggacatggtaagttttgctatggatctcttggcttcaaattcacc |
48739343 |
T |
|
| Q |
204 |
tgatgagaagctcattggagcgagaattcttcgacaatttgctaacagtgagaggttttcagacgatacacttcaaaagattggaatttctatatctttg |
303 |
Q |
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||||||| |||||||||| || ||| |||| | || ||| | | ||||| |||||| || |||| |||||||||||||||||| ||||| | |
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| T |
48739344 |
tgatgagcagctcattggcgcaagagttctaaggcagttttcgatcagtgcaccgttttctgagaatactcttcaaaagattggaattgacatatcagtt |
48739443 |
T |
|
| Q |
304 |
gtggagagactagttgagatgttgaattggacagaccacaaggaggaagaaattaggctgtctgctgcggagattttatcaaaactag |
391 |
Q |
| |
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|| |||||||| ||||||||||||||||||||| | || |||||||||||||||||||| || |||| |||| |||||||||||||| |
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| T |
48739444 |
gtagagagacttgttgagatgttgaattggacatatcataaggaggaagaaattaggctttcatctgcagagactttatcaaaactag |
48739531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 407
Target Start/End: Original strand, 48732206 - 48732356
Alignment:
| Q |
257 |
ggttttcagacgatacacttcaaaagattggaatttctatatctttggtggagagactagttgagatgttgaattggacagaccacaaggaggaagaaat |
356 |
Q |
| |
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||||||| || ||||| |||||||||||||||||| ||||| | || |||||||| ||||||||||||||||||||| || |||||||||||||| |
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| T |
48732206 |
ggttttctgaggatactcttcaaaagattggaattgacatatcagttgtagagagacttgttgagatgttgaattggacatctcataaggaggaagaaat |
48732305 |
T |
|
| Q |
357 |
taggctgtctgctgcggagattttatcaaaactagcaggcaagaagcagaa |
407 |
Q |
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|||||| || ||||| |||| ||||||||||||||| || | ||||||||| |
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| T |
48732306 |
taggctttcagctgcagagactttatcaaaactagctggtatgaagcagaa |
48732356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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