View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_7 (Length: 399)
Name: NF12723_low_7
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 36523479 - 36523867
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523479 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
36523578 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523579 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaca |
36523678 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523679 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtg |
36523778 |
T |
|
| Q |
301 |
cttgtaccatgctgatatggccatatgttttgaaagctacattagcaagtggctttccaggatagatgaaaccaattaccaactctgtg |
389 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523779 |
cttgtaccatgctgatgtggccatatgttttgaaagctacattagcaagtggctttccaggatagatgaaaccaattaccaactctgtg |
36523867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 36530312 - 36530700
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36530312 |
taaggaaaaaccaattcaattcgggataaacaccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
36530411 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||| |
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|
| T |
36530412 |
atcaccaggacatgtccaaggactaccttttggcaataatgattcatcacatatgttctcaatagatgttagaagccaccatgcggttccaaagtgaaca |
36530511 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtg |
300 |
Q |
| |
|
||||||| |||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| || |||| |
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| T |
36530512 |
gatgaagcaactactgtgcctacaagttgcacaatgaacattgattttggtgcaattttcatatagtggcctaatttgaagtcaccaagaaaaccaagtg |
36530611 |
T |
|
| Q |
301 |
cttgtaccatgctgatatggccatatgttttgaaagctacattagcaagtggctttccaggatagatgaaaccaattaccaactctgtg |
389 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
36530612 |
cttgtaccatactgatatggccatatgttttgaaagctacattagcaagcggctttcctggatagatgaaaccaattactaactctgtg |
36530700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 36535924 - 36536312
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||| |
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|
| T |
36535924 |
taaggaaaaaccaattcatcccaggataaacgccgtcattggtaaacattctctttggccctacaactccccatataatggaagcattgtaaaatgcatc |
36536023 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaca |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
36536024 |
atcaccaggacacgtccaaggactacctttcggcaacaacgattcatcacatatgttctctatagatgttagaagccaccatgctgttccaaagtggaca |
36536123 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtg |
300 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| || |||| |
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|
| T |
36536124 |
gacaaagaaactacagtgccgactagctgcacaataaacattgattttggtggaattttcatatagtggcctaatttgaagtcaccgagaaaaccaagtg |
36536223 |
T |
|
| Q |
301 |
cttgtaccatgctgatatggccatatgttttgaaagctacattagcaagtggctttccaggatagatgaaaccaattaccaactctgtg |
389 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
36536224 |
cttgtaccatgctcgtatggccatatgttttgaaagctacattagctagtggctttcctggataggtgaaaccaattaccaactctgtg |
36536312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 389
Target Start/End: Complemental strand, 42059907 - 42059521
Alignment:
| Q |
3 |
aggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatcat |
102 |
Q |
| |
|
||||||||||||||||| |||| |||| || || ||||||||||| || | ||| ||||| |||||||| |||||||||||||||||||| ||||||| |
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|
| T |
42059907 |
aggaaaaaccaattcattccagggtaaattccatccttggtaaacatcctttgtggtcctactactccccatatgattgaagcattgtaaaacacatcat |
42059808 |
T |
|
| Q |
103 |
caccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggacaga |
202 |
Q |
| |
|
|||||||||| ||||| ||||| || | ||||| | |||| ||||||||||||| |||| |||||||||||||||||||| | |||| ||| |
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|
| T |
42059807 |
caccaggacaagtccatggactaccctcaggcaacattgatgcatcacatatgtttggaatagttgttagaagccaccatgctgtgctgaagtatacact |
42059708 |
T |
|
| Q |
203 |
tgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtgct |
302 |
Q |
| |
|
||||| ||| | ||| ||||| | || || |||||||| | |||||| ||||||||||| || || |||||||||||||||||||| || | ||||| |
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|
| T |
42059707 |
tgaagcaaccaaagttcctaccaattgtactatgaacatagcttttggaggaattttcatgtagtgtcctaatttgaagtcttcaaggaaactaagtgcc |
42059608 |
T |
|
| Q |
303 |
tgtaccatgctgatatggccatatgttttgaaagctacattagcaagtggctttccaggatagatgaaaccaattaccaactctgtg |
389 |
Q |
| |
|
||| |||||||||| | ||||| || ||||| |||||||||||||| |||||||| || || | ||| ||||| | |||||||||| |
|
|
| T |
42059607 |
tgtgccatgctgatgtatccataagtcttgaaggctacattagcaagaggctttccggggtaaaggaacccaatgatcaactctgtg |
42059521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 39 - 361
Target Start/End: Complemental strand, 42075168 - 42074846
Alignment:
| Q |
39 |
ttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatcatcaccaggacatgtccaaggacttccttttggcaata |
138 |
Q |
| |
|
||||| ||||| || ||||| ||||| | |||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || | |||||| | |
|
|
| T |
42075168 |
ttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaaaaaacctcgtcaccaggacaagtccatggactaccatctggcaaca |
42075069 |
T |
|
| Q |
139 |
atgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggacagatgaagaaactacagtgcctactagctgcacaatgaa |
238 |
Q |
| |
|
||||| ||| ||||||| |||| |||||||||||||||||||| || |||| ||| ||||| ||| | ||| ||||| | ||| || ||||| |
|
|
| T |
42075068 |
ttgatttatcgcatatgtgtggaatagtcgttagaagccaccatgctgtgccgaagtatacacttgaagcaaccaaagttcctaccaactgtactatgaa |
42074969 |
T |
|
| Q |
239 |
cattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtgcttgtaccatgctgatatggccatatgttttgaaagct |
338 |
Q |
| |
|
||| |||||||| ||||||||||| || | |||||||||||||||| ||| || | ||||| ||| |||||||||| | ||||| || ||||| ||| |
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|
| T |
42074968 |
catagattttggaggaattttcatgtagagacctaatttgaagtcttgaaggaaactaagtgcctgtgccatgctgatgtatccataagtcttgaaggct |
42074869 |
T |
|
| Q |
339 |
acattagcaagtggctttccagg |
361 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
42074868 |
acattggcaagaggctttccagg |
42074846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 42083784 - 42083429
Alignment:
| Q |
3 |
aggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatcat |
102 |
Q |
| |
|
||||||||||||||||| |||| || | || || ||||| ||||| || ||||| ||||| | |||||| |||||||||||||||||||| || |||| |
|
|
| T |
42083784 |
aggaaaaaccaattcattccagggtatattccatccttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaaaaaacctcat |
42083685 |
T |
|
| Q |
103 |
caccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggacaga |
202 |
Q |
| |
|
|||||||||| ||||| ||||| || | |||||| | ||||| ||| ||||||| |||| |||||||||||||||||||| | ||| ||| |
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|
| T |
42083684 |
caccaggacaagtccatggactaccatctggcaacattgatttatcgcatatgtgtggaatagttgttagaagccaccatgctgtgctgaagcatacact |
42083585 |
T |
|
| Q |
203 |
tgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtgct |
302 |
Q |
| |
|
||||||||| | ||| ||||| | ||||| |||||||| |||||||| ||||||||||| || || |||||||||||||||| ||| || | ||||| |
|
|
| T |
42083584 |
tgaagaaaccaaagttcctaccaattgcactatgaacatagattttggaggaattttcatgtagtgtcctaatttgaagtcttgaaggaaactaagtgcc |
42083485 |
T |
|
| Q |
303 |
tgtaccatgctgatatggccatatgttttgaaagctacattagcaagtggctttcc |
358 |
Q |
| |
|
||| |||||| || | ||||| || ||||| |||||||| ||||| |||||||| |
|
|
| T |
42083484 |
tgtgacatgctcatgtatccataagtcttgaaggctacattggcaagaggctttcc |
42083429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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