View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12723_low_8 (Length: 389)
Name: NF12723_low_8
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 13447062 - 13446681
Alignment:
| Q |
1 |
ggtgccgttccacttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttg |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13447062 |
ggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtatgaatataggagttgttggtcttg |
13446963 |
T |
|
| Q |
101 |
gtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446962 |
gtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaaca |
13446863 |
T |
|
| Q |
201 |
cttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
13446862 |
cttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttcattatttcagaaattga |
13446763 |
T |
|
| Q |
301 |
taatgt----taatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
378 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446762 |
taatgttaattaatcaagaaactaataatgtacaacattttataggctgcaacgagtactttgaatggcattattgacacag |
13446681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 376
Target Start/End: Complemental strand, 13426400 - 13426027
Alignment:
| Q |
3 |
tgccgttccacttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggt |
102 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
13426400 |
tgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtatgaatataggcgttgttggtcttggt |
13426301 |
T |
|
| Q |
103 |
ggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacact |
202 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||| ||||||| || ||||||||||| |||||||| | |
|
|
| T |
13426300 |
ggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatt |
13426201 |
T |
|
| Q |
203 |
taggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattgata |
302 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||| || | |
|
|
| T |
13426200 |
taggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgattcatttgattgatttgcgaa-tttcattatttcagaaatcgaga |
13426102 |
T |
|
| Q |
303 |
atgttaatcaagaaactaatattgtacaacgtttt-ataggctgcaacgagtactttgaatggcattattgacac |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
13426101 |
atgttaatcaagaaactaatattgtacaacgttttaataggctgcaatgggtactttgaatggtattatcgacac |
13426027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 13419509 - 13419135
Alignment:
| Q |
3 |
tgccgttccacttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggt |
102 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
13419509 |
tgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttggtcttggt |
13419410 |
T |
|
| Q |
103 |
ggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacact |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||| | || |||||||||||||||||||||| |
|
|
| T |
13419409 |
ggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacact |
13419310 |
T |
|
| Q |
203 |
taggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaatttttattatttcagaaattgata |
302 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||| || | ||||| |||||||| | |
|
|
| T |
13419309 |
tgggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtatatgattcatttgattcatttgtgaa-ttaaaatattttagaaattggca |
13419211 |
T |
|
| Q |
303 |
atgttaatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
378 |
Q |
| |
|
||| ||||||| |||||||||||||||||| ||| |||| |||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
13419210 |
atggtaatcaataaactaatattgtacaacatttcatagactgcaatgggtactttgaatggtattattgacacag |
13419135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 37 - 252
Target Start/End: Complemental strand, 13453979 - 13453764
Alignment:
| Q |
37 |
tatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaag |
136 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |||| |
|
|
| T |
13453979 |
tatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaag |
13453880 |
T |
|
| Q |
137 |
cttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatcc |
236 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||||| ||||| |
|
|
| T |
13453879 |
ctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcggactcatttctaataagccgtgatcc |
13453780 |
T |
|
| Q |
237 |
agaacagatgcaggta |
252 |
Q |
| |
|
| | |||||| ||||| |
|
|
| T |
13453779 |
aaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 13413151 - 13412958
Alignment:
| Q |
16 |
ctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcata |
115 |
Q |
| |
|
||||| ||||| ||||| || |||||||||||| || |||||||||||| ||||||||| | ||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
13413151 |
ctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgttgttggtcttggtggacttggccata |
13413052 |
T |
|
| Q |
116 |
tggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
209 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
13413051 |
tggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggagc |
13412958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 13385430 - 13385623
Alignment:
| Q |
16 |
ctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcata |
115 |
Q |
| |
|
||||| ||||| |||| ||||| |||||||||||| | |||||||||||||| |||||| | || | || ||||| ||||||||||| |||||||| | |
|
|
| T |
13385430 |
ctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttggtcaca |
13385529 |
T |
|
| Q |
116 |
tggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
13385530 |
tggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc |
13385623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 13393676 - 13393851
Alignment:
| Q |
34 |
gtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgcta |
133 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||| | |
|
|
| T |
13393676 |
gtgtatagtcctcttcgatattttggactcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaa |
13393775 |
T |
|
| Q |
134 |
aagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
209 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||| || || || || || || |||||||||||| || ||||||| |
|
|
| T |
13393776 |
aagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagc |
13393851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 13389251 - 13389444
Alignment:
| Q |
16 |
ctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcata |
115 |
Q |
| |
|
||||| ||||| |||| ||||| |||||||||||| ||| ||||||||| || |||||| | |||||| ||||| ||||||||||| |||||||| | |
|
|
| T |
13389251 |
ctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacctggtcttcgtataggtgttgttggtcttggtgggcttggtcaca |
13389350 |
T |
|
| Q |
116 |
tggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
209 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | || || || |||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
13389351 |
tggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc |
13389444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 13373201 - 13373039
Alignment:
| Q |
53 |
attttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagt |
152 |
Q |
| |
|
|||||||||| ||||||||||| | || | || || || |||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
13373201 |
attttggacttaacaagcctggtttacatgtgggtgtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgt |
13373102 |
T |
|
| Q |
153 |
gactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactc |
215 |
Q |
| |
|
|| || || || || || ||||| || | |||||||| || |||||||||||||| ||||| |
|
|
| T |
13373101 |
aacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggagctgactc |
13373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 13379047 - 13378835
Alignment:
| Q |
3 |
tgccgttccacttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggt |
102 |
Q |
| |
|
||||| ||| || ||||| ||||| ||||||||||||| || | | |||||||||| | ||||| ||||| || ||||||| || || ||||||||| |
|
|
| T |
13379047 |
tgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttggtcttggt |
13378948 |
T |
|
| Q |
103 |
ggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacact |
202 |
Q |
| |
|
||| | ||||||||||||||||| || || ||||| ||||||| ||| || ||||| | ||||| || ||||| || | |||||||| || |||| || |
|
|
| T |
13378947 |
ggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgct |
13378848 |
T |
|
| Q |
203 |
taggagcagactc |
215 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
13378847 |
taggagctgactc |
13378835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 47601305 - 47601119
Alignment:
| Q |
29 |
tcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatt |
128 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| || ||||||||| ||||||| ||||| |||||||||||||||||||| |||||||| || || |
|
|
| T |
47601305 |
tcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtt |
47601206 |
T |
|
| Q |
129 |
tgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagcagactc |
215 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| ||||||| |||| ||||||||| ||||| |
|
|
| T |
47601205 |
tgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactc |
47601119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 28430712 - 28430767
Alignment:
| Q |
94 |
ggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28430712 |
ggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
28430767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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