View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12723_low_9 (Length: 356)
Name: NF12723_low_9
Description: NF12723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12723_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 38126292 - 38126577
Alignment:
| Q |
19 |
acagcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcatag |
118 |
Q |
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| T |
38126292 |
acagcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcatag |
38126391 |
T |
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| Q |
119 |
gtctctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacat |
218 |
Q |
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| T |
38126392 |
gtctctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacat |
38126491 |
T |
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| Q |
219 |
atgttgcttattttgcaagttttctactgtatacatggtcctcagatcaaacctataacatgtaggattagttcacttattttaat |
304 |
Q |
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| T |
38126492 |
atgttgcttattttgcaagttttctactgtatacatggtccttagatcaaacctataacatgtaggattagttcacttattttaat |
38126577 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 39708558 - 39708599
Alignment:
| Q |
297 |
attttaatgcacattccttaagttttatttctccatattttt |
338 |
Q |
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| T |
39708558 |
attttaatgcacattccttaagtcttatttctccatattttt |
39708599 |
T |
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