View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12724_high_1 (Length: 579)

Name: NF12724_high_1
Description: NF12724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12724_high_1
NF12724_high_1
[»] chr4 (13 HSPs)
chr4 (295-492)||(5141636-5141833)
chr4 (1-196)||(5141341-5141536)
chr4 (3-196)||(5178686-5178879)
chr4 (50-173)||(4846282-4846405)
chr4 (48-173)||(5165551-5165676)
chr4 (430-492)||(5178968-5179030)
chr4 (63-173)||(5192886-5192996)
chr4 (429-492)||(5193539-5193602)
chr4 (429-492)||(4845683-4845746)
chr4 (60-117)||(5205600-5205657)
chr4 (429-487)||(5154447-5154505)
chr4 (429-475)||(5170953-5170999)
chr4 (372-404)||(51714405-51714437)
[»] scaffold0011 (1 HSPs)
scaffold0011 (356-401)||(230335-230380)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 295 - 492
Target Start/End: Original strand, 5141636 - 5141833
Alignment:
Q  295 gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5141636 gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg 5141735  T
Q  395 gagtatgctctttagcttcatnnnnnnnntgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 492  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  5141736 gagtatgctctttagcttcataaaaaaaatgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattaaatgattaa 5141833  T

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Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5141341 - 5141536
Alignment:
Q  1 tctggtcaaatagttgaattatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5141341 tctggtcaaatagttgaattatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccgtttgaagagctac 5141440  T
Q  101 gcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 196  Q
    |||||||| |||| |||   |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5141441 gcctcctcaacttatcctccaaccatattcaaggctggattggcaacgaaggtactactttggtccctatataagagttctttaacaaatttatac 5141536  T

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Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 5178686 - 5178879
Alignment:
Q  3 tggtcaaatagttgaattatccatctatagtttaataaatgatttccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgc 102  Q
    |||||| ||||||||||||||||||||||||||| || ||   ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||     
T  5178686 tggtcacatagttgaattatccatctatagtttactatatttgttccctgatcctaatatgttaaatgtttcattgttccgtccatttgaagagttacgt 5178785  T
Q  103 ctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 196  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178786 ctcctcgacttgtccaagaacaatattcaaggttggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 5178879  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 4846405 - 4846282
Alignment:
Q  50 ctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacga 149  Q
    |||||||||  ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||    
T  4846405 ctgatcctaagatgttaaatgtttcactgttctgtccatttaaagagctacgcctcctcgacttgtccgacaacgatattcaaggctggattggcaacga 4846306  T
Q  150 aggtactactttggtccttatata 173  Q
    ||||||||  ||||||||||||||    
T  4846305 aggtactatgttggtccttatata 4846282  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 5165551 - 5165676
Alignment:
Q  48 ccctgatcctattatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaac 147  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||    ||||||| ||||||| |||     
T  5165551 ccctgattctaagatgttaaatgtttcattgttccgtccatttgaagagctacgcctccttgacttgtcctataactcctttcaaggttggattggcaat 5165650  T
Q  148 gaaggtactactttggtccttatata 173  Q
    ||||||||||| |||| |||||||||    
T  5165651 gaaggtactacgttggcccttatata 5165676  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 430 - 492
Target Start/End: Original strand, 5178968 - 5179030
Alignment:
Q  430 ttttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 492  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5178968 ttttatacattctttaattttaggatcgagctctgtaattttttaggccaattgagtgattaa 5179030  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 5192886 - 5192996
Alignment:
Q  63 gttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttg 162  Q
    ||||||||||||| | |||||||||||| |||||||||| ||||||||||||||| | |||    ||| ||||||||||| ||||||||||||||| ||     
T  5192886 gttaaatgtttcactattccgtccatttaaagagctacggctcctcgacttgtcctacaactcctttctaggctggattggcaacgaaggtactacgttc 5192985  T
Q  163 gtccttatata 173  Q
    |||||||||||    
T  5192986 gtccttatata 5192996  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 492
Target Start/End: Original strand, 5193539 - 5193602
Alignment:
Q  429 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 492  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  5193539 attttataaattctttaattttaggatcgagctctgtaattttttaggccaattgagggattaa 5193602  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 4845746 - 4845683
Alignment:
Q  429 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 492  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  4845746 attttataaattctttaattttaggatcgagctctgtaatttttttggccaattgagtaattaa 4845683  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 5205600 - 5205657
Alignment:
Q  60 tatgttaaatgtttcattgttccgtccatttgaagagctacgcctcctcgacttgtcc 117  Q
    |||||||||| ||||| |||||||||||||||||||| |||| || ||||| ||||||    
T  5205600 tatgttaaatatttcactgttccgtccatttgaagagttacgtcttctcgatttgtcc 5205657  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 5154447 - 5154505
Alignment:
Q  429 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtg 487  Q
    |||| ||| |||||||||||||||||||||  | ||||||||||||| | |||||||||    
T  5154447 atttcataaattctttaattttaggatcgacttatgtaattttttagacaaattgagtg 5154505  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 5170953 - 5170999
Alignment:
Q  429 attttatacattctttaattttaggatcgaactctgtaattttttag 475  Q
    |||| ||| ||||||||||||||||||||| || |||||||||||||    
T  5170953 atttcataaattctttaattttaggatcgacctatgtaattttttag 5170999  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 51714437 - 51714405
Alignment:
Q  372 ggtggtgttgacttaagactttggagtatgctc 404  Q
    |||||||||||||| ||||||||||||||||||    
T  51714437 ggtggtgttgactttagactttggagtatgctc 51714405  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 230335 - 230380
Alignment:
Q  356 ccacttgggatggtttggtggtgttgacttaagactttggagtatg 401  Q
    ||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  230335 ccacttgggctggcttggtggtgttgacttgagactttgaagtatg 230380  T

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