View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12725_low_1 (Length: 314)
Name: NF12725_low_1
Description: NF12725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12725_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 4180035 - 4179751
Alignment:
| Q |
18 |
ctgaagagagaaaattgtgattttttagacgagggtagttaaatatggatgtgttaatttcttcttttgaggttgtaggtaacatgttgtgtatttgtac |
117 |
Q |
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| T |
4180035 |
ctgaagagagaaaattgtgattttttagacgagggtagttaaatatggatgtgttaatttcttcttttgaggttgtaggtaacatgttgtgtatttgtac |
4179936 |
T |
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| Q |
118 |
ccatttattaaggaatttttggttgaccaaaacctctgccaagaggaggctacaactaatgccgattgagtatcctccacatttgaagtttgtcacctga |
217 |
Q |
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| T |
4179935 |
ccatttattaaggaatttttggtttaccaaaacctctgccaagaggaggctacaacaaatgccgattgagtatcctccacatttgaagtttgtcacctga |
4179836 |
T |
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| Q |
218 |
agnnnnnnnccacatctacaaattaaattgtatatctgatcaaactcaaattcattaaca-----gatacattggacccagtata |
297 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4179835 |
agaaaaaaaccacatctacaaattaaattgtatatctgatcaaactcaaattcattaacaggtacgatacattggacccagtata |
4179751 |
T |
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