View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12725_low_2 (Length: 279)
Name: NF12725_low_2
Description: NF12725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12725_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 56379207 - 56378984
Alignment:
| Q |
32 |
taatagtaatagtaatagtaatacaaacaaatcggcctctcagagtccatgcatgatgaattgttaatccctgaggaggagaggagagaaacatcactca |
131 |
Q |
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| T |
56379207 |
taatagtaatagtaatagtaatacgaacaaatcggcctc--agagtccatgcatgatgaattgttaatccctgaggag---aggagagaaacatgactca |
56379113 |
T |
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| Q |
132 |
actcaaaacaagtacgtaattaattaattaatatgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacggatggatttataaatg |
231 |
Q |
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| T |
56379112 |
actcaaaacaagtacgtaattaattaat----atgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacggatggatttataaatg |
56379017 |
T |
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| Q |
232 |
caagagaaagacttaaattaattaagaagtttt |
264 |
Q |
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| T |
56379016 |
caagagaaagacttaaattaattaagaagtttt |
56378984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 56379262 - 56379211
Alignment:
| Q |
1 |
gaaaagggttttatgtaatgtaattgtattctaatagtaatagtaatagtaa |
52 |
Q |
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| T |
56379262 |
gaaaagggttttatgtaatgtaatagtattctaatagtaatagtaatagtaa |
56379211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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