View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12725_low_4 (Length: 230)
Name: NF12725_low_4
Description: NF12725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12725_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12934606 - 12934458
Alignment:
| Q |
1 |
tcacctgccatatcagcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934606 |
tcacctgccatatccgcatctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
12934507 |
T |
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| Q |
101 |
acttcacagcttcccaatgttctttttccggattggaaagaaacctgct |
149 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12934506 |
acttcacagcttcccaatgttcttttcccggattggaaagaaacctgct |
12934458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 12934220 - 12934162
Alignment:
| Q |
160 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934220 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
12934162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 28607997 - 28608146
Alignment:
| Q |
1 |
tcacctgccatatcagcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607997 |
tcacctgccatatcagcatctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
28608096 |
T |
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| Q |
101 |
acttcacagcttcccaatgttcttttt-ccggattggaaagaaacctgct |
149 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28608097 |
acttcacagcttcccaatgttctttttcccggattggaaagaaacctgct |
28608146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14177876 - 14177728
Alignment:
| Q |
1 |
tcacctgccatatcagcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14177876 |
tcacctgccatatccgcatctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
14177777 |
T |
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| Q |
101 |
acttcacagcttcccaatgttctttttccggattggaaagaaacctgct |
149 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
14177776 |
acttcacagcttcccagtgttcttttcccggattggaaagaaacctgct |
14177728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 14177490 - 14177432
Alignment:
| Q |
160 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14177490 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
14177432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 28608385 - 28608443
Alignment:
| Q |
160 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608385 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
28608443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 15300392 - 15300244
Alignment:
| Q |
1 |
tcacctgccatatcagcatctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15300392 |
tcacctgccatatccgcatatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatcc |
15300293 |
T |
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| Q |
101 |
acttcacagcttcccaatgttctttttccggattggaaagaaacctgct |
149 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
15300292 |
acttcacaacttcccaatgttcttttcccggattggaaagaaacctgct |
15300244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 15300006 - 15299948
Alignment:
| Q |
160 |
ctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggccta |
218 |
Q |
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|||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15300006 |
ctttctagatttccggtctcgcaaagtcttcatgcctaagatttgctttgcagggccta |
15299948 |
T |
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