View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12725_low_5 (Length: 220)
Name: NF12725_low_5
Description: NF12725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12725_low_5 |
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| [»] scaffold0581 (2 HSPs) |
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| [»] scaffold0534 (2 HSPs) |
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| [»] scaffold0455 (2 HSPs) |
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Alignment Details
Target: scaffold0581 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 2198 - 2004
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaaaactaactaatggtttttaatttgtaatgtgtaaaactataagaact |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2198 |
cagagaagtttcaagagttttttgatgggggagaagcttcgaatgcagggtaaaactaactaatggtttttaatttgtaatgtgtaaaactataagaact |
2099 |
T |
|
| Q |
114 |
aactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagcaaacttgatgtc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2098 |
aactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagcaaacttgatgtc |
2004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 2323 - 2246
Alignment:
| Q |
78 |
ggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatc |
157 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||| |
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|
| T |
2323 |
ggtttttaatttgtgatgtgtaaaactataagaacgaactaatggttttctata--tgatgtgtttgccaatagggaatc |
2246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 6893 - 7102
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaa----------------aactaactaatggtttttaatttgtaatgtg |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6893 |
cagagaagtttcgagatttttttgatgggggagaagcttcgaatacagggtaagaaatgaatatatatgaactaactaatggtttttaatttgtaatgtg |
6992 |
T |
|
| Q |
98 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6993 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcggttaaaacagaatgtgaagcaagcactgtgaagcaagca |
7092 |
T |
|
| Q |
198 |
aacttgatgt |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
7093 |
aacttgatgt |
7102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 6778 - 6859
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatc |
157 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
6778 |
taatggtttttaatttgtgatgtgtaaaactataagaacgaactaatggttttctata--tgatgtgtttgccaatagtgaatc |
6859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 19848048 - 19847840
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaa----------------aactaactaatggtttttaatttgtaatgtg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
19848048 |
cagagaagtttcgagagttttttgatgggggagaagcttcgaatgcagggtaagaaatgaatatatatgaactaactaatggtttttaatttgtaatgtg |
19847949 |
T |
|
| Q |
98 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagca |
197 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19847948 |
taaaactaaaagaactaactaatgattttctatatgtgatgtgtttgccaatagggaatcggttaaaacacaatgtgaagcaagcaatgtgaagcaagca |
19847849 |
T |
|
| Q |
198 |
aacttgatg |
206 |
Q |
| |
|
||||||||| |
|
|
| T |
19847848 |
aacttgatg |
19847840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 19848176 - 19848064
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgt |
173 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| | | || || ||||| |
|
|
| T |
19848176 |
taatggtttttaatttgtgatgtgtaaaactataagaacgaactaatcgttttctata--tgatgtgtttgccaatagtgaatc-agttaagcaaaatgt |
19848080 |
T |
|
| Q |
174 |
gaagcaagcaatgtga |
189 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
19848079 |
gaaacaagcaatgtga |
19848064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 6492 - 6283
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaa----------------aactaactaatggtttttaatttgtaatgtg |
97 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
6492 |
cagagaagtttcgagaattttttgatcggggagaagcttcgaatgcagggtaagaaatgaatatatatgaactaactaatggtttttaatttgtaatttg |
6393 |
T |
|
| Q |
98 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagca |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6392 |
taaaactataagaaccaactaatgattttctatatgtgatgtgtttgccaatagtgaatcggttaaaacagaatgtgaagcaagcaatgtgaagcaagaa |
6293 |
T |
|
| Q |
198 |
aacttgatgt |
207 |
Q |
| |
|
|| ||||||| |
|
|
| T |
6292 |
aagttgatgt |
6283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 6621 - 6508
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgt |
173 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
6621 |
taatggtttttaatttgtgatgtgtaaaactataagaacgaactaatggttttctata--tgatgtgtttgccaatagtgaatcagttaagccacaatgt |
6524 |
T |
|
| Q |
174 |
gaagcaagcaatgtga |
189 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
6523 |
gaaacaagcaatgtga |
6508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 28127893 - 28127684
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaa----------------aactaactaatggtttttaatttgtaatgtg |
97 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
28127893 |
cagagaagtttcgagaattttttgatcggggagaagcttcgaatgcagggtaagaaatgaatatatatgaactaactaatggtttttaatttgtaatttg |
28127794 |
T |
|
| Q |
98 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaatgtgaagcaagca |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28127793 |
taaaactataagaaccaactaatgattttctatatgtgatgtgtttgccaatagtgaatcggttaaaacagaatgtgaagcaagcaatgtgaagcaagaa |
28127694 |
T |
|
| Q |
198 |
aacttgatgt |
207 |
Q |
| |
|
|| ||||||| |
|
|
| T |
28127693 |
aagttgatgt |
28127684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 28128022 - 28127909
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgt |
173 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
28128022 |
taatggtttttaatttgtgatgtgtaaaactataagaacgaactaatggttttctata--tgatgtgtttgccaatagtgaatcagttaagccacaatgt |
28127925 |
T |
|
| Q |
174 |
gaagcaagcaatgtga |
189 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
28127924 |
gaaacaagcaatgtga |
28127909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 18760153 - 18760231
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagt |
152 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||| |
|
|
| T |
18760153 |
taatggtttttaatttgtgatgtataaaactataagaactaactaatggttttatatatatgatgtgttcgccaatagt |
18760231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 18760089 - 18760128
Alignment:
| Q |
27 |
agagttttttgatggcggagaagcttcgaatgcagggtaa |
66 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18760089 |
agagttttttgatgggagagaagcttcgaatgcagggtaa |
18760128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 17227804 - 17227618
Alignment:
| Q |
14 |
cagagaagtttcgagagttttttgatggcggagaagcttcgaatgcagggtaa----------------aactaactaatggtttttaatttgtaatgtg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17227804 |
cagagaagtttcgagagttttttgatgggggaggagcttcgaatgcagggtaagaaatgaatatatatgaactaactaatggtttttaatttgtaatgtg |
17227705 |
T |
|
| Q |
98 |
taaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgtgaagcaagcaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17227704 |
taaaactataagaactaactaatgattttatatatgtgatgtgtttgccaatagtgaatcggttaaaacagaatgtgaagcaagcaa |
17227618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 17227933 - 17227820
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagtgaatcgattaaaacagaatgt |
173 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
17227933 |
taatggttttgaatttgtgatgtgtaaaattataagaacgaactaatggttttctata--tgatgtgtttgccaatagtgaatcagttaagccacaatgt |
17227836 |
T |
|
| Q |
174 |
gaagcaagcaatgtga |
189 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
17227835 |
gaaacaagcaatgtga |
17227820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 9559406 - 9559484
Alignment:
| Q |
74 |
taatggtttttaatttgtaatgtgtaaaactataagaactaactaatgattttctatatgtgatgtgtttgccaatagt |
152 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
9559406 |
taatggtttttaatttgtgatgtgtaaaactataagaactaactaatggttttatatatatgatgtgtttgccaatagt |
9559484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 9559343 - 9559381
Alignment:
| Q |
27 |
agagttttttgatggcggagaagcttcgaatgcagggtaa |
66 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9559343 |
agagttttttgatgg-ggagaagcttcgaatgcagggtaa |
9559381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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