View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12726_high_1 (Length: 421)
Name: NF12726_high_1
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12726_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 34326713 - 34326840
Alignment:
| Q |
114 |
atgtaaggccgtgtagttaaaataataaacttgtcgagaatattggatctatattctttcactttcgatttgaatttatcggtttttaatttcacttcaa |
213 |
Q |
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| T |
34326713 |
atgtaaggccgtgtagttaaaataataaccttgttgagaatattggatctatatactttcactttcgatttgaatttatcggtttttaatttcacttcaa |
34326812 |
T |
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| Q |
214 |
cttataaacataagagaatataggttta |
241 |
Q |
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|||| |||||||||||||||||| |||| |
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| T |
34326813 |
cttaaaaacataagagaatatagattta |
34326840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 305 - 413
Target Start/End: Original strand, 34326885 - 34326993
Alignment:
| Q |
305 |
gaaaatatcaaagcattgttttcattgtttctaaaaatgcattctttcaaatttgtctttcatagcctctctatcataaaacaatttttactgcatgagt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34326885 |
gaaaatatcaaagcattgttttcattgtttctaaaaatgcattctttcaaatttgtctttcatagcctctctatcataaaacaatttttactgcatgagc |
34326984 |
T |
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| Q |
405 |
tgttcatct |
413 |
Q |
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||||||||| |
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| T |
34326985 |
tgttcatct |
34326993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 34326666 - 34326728
Alignment:
| Q |
33 |
catgattgagaagaaaggacatgtttttacacacctacttctcaatcatgtaaggccgtgtag |
95 |
Q |
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| T |
34326666 |
catgattgagaagaaaggacatgtttttacacaccttcttctcaatcatgtaaggccgtgtag |
34326728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 35887146 - 35887208
Alignment:
| Q |
305 |
gaaaatatcaaagcattgttttcattgtttctaaaaatgcattctttcaaatttgtctttcat |
367 |
Q |
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| T |
35887146 |
gaaaataccaaaacatcattttcattgtttctaaaaatgcattctttctaacttgtctttcat |
35887208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 352
Target Start/End: Original strand, 26128643 - 26128671
Alignment:
| Q |
324 |
tttcattgtttctaaaaatgcattctttc |
352 |
Q |
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| T |
26128643 |
tttcattgtttctaaaaatgcattctttc |
26128671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 17553053 - 17553097
Alignment:
| Q |
305 |
gaaaatatcaaagcattgttttcattgtttctaaaaatgcattct |
349 |
Q |
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| T |
17553053 |
gaaaatgtcaaaacattgttttcattgtttctgaaaatgcattct |
17553097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 35514624 - 35514581
Alignment:
| Q |
195 |
gtttttaatttcacttcaacttataaacataagagaatataggt |
238 |
Q |
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||||||| || |||||||||| |||||||||||||||||||||| |
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| T |
35514624 |
gtttttatttccacttcaactaataaacataagagaatataggt |
35514581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 16918037 - 16918082
Alignment:
| Q |
305 |
gaaaatatcaaagcattgttttcattgtttctaaaaatgcattctt |
350 |
Q |
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|||||| ||||| || |||||||||||||| ||||||||||||||| |
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| T |
16918037 |
gaaaatttcaaaacactgttttcattgtttttaaaaatgcattctt |
16918082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 322517 - 322478
Alignment:
| Q |
313 |
caaagcattgttttcattgtttctaaaaatgcattctttc |
352 |
Q |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
322517 |
caaaacattgtgttcattgtttctaaaaatgcattctttc |
322478 |
T |
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