View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12726_low_11 (Length: 223)

Name: NF12726_low_11
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12726_low_11
NF12726_low_11
[»] chr7 (2 HSPs)
chr7 (20-82)||(30310656-30310718)
chr7 (20-76)||(42612082-42612138)
[»] chr4 (1 HSPs)
chr4 (20-88)||(34122490-34122558)
[»] chr3 (1 HSPs)
chr3 (20-77)||(27749467-27749524)
[»] chr8 (1 HSPs)
chr8 (26-82)||(3714195-3714251)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30310718 - 30310656
Alignment:
Q  20 atttttatttggattcttcatctttgtttttcatgattcttctttgtgtgaacaataatcttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30310718 atttttatttggattcttcatctttgtttttcatgattcttctttgtgtgaacaataatcttt 30310656  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 42612138 - 42612082
Alignment:
Q  20 atttttatttggattcttcatctttgtttttcatgattcttctttgtgtgaacaata 76  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42612138 attttgatttggattcttcatctttgttattcatgattcttctttgtgtgaacaata 42612082  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 34122490 - 34122558
Alignment:
Q  20 atttttatttggattcttcatctttgtttttcatgattcttctttgtgtgaacaataatctttgtttca 88  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||    
T  34122490 attttgatttggattcttcatctttgttattcatgattattctttgtgtgaacaataacctctgtttca 34122558  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 27749524 - 27749467
Alignment:
Q  20 atttttatttggattcttcatctttgtttttcatgattcttctttgtgtgaacaataa 77  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  27749524 attttgatttggattcttcatctttgttattcatgattattctttgtgtgaacaataa 27749467  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 3714195 - 3714251
Alignment:
Q  26 atttggattcttcatctttgtttttcatgattcttctttgtgtgaacaataatcttt 82  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  3714195 atttggattcttcatctttgttattcatgattcttctttttgtgaacaataaccttt 3714251  T

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