View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12726_low_2 (Length: 375)
Name: NF12726_low_2
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12726_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 49041351 - 49041005
Alignment:
| Q |
19 |
caaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041351 |
caaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccg |
49041252 |
T |
|
| Q |
119 |
tctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggcagggttgcaaaaggggatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49041251 |
tctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggccgggttgcaaaaggggatc |
49041152 |
T |
|
| Q |
219 |
gggtctggcagattgcatttgggtcgggttttaagtgtaacagcgccgtgtggaaggccgtgcgcgacttgcccgtcgttggggattggcggggcaaccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49041151 |
gggtctggcagattgcatttgggtcgggttttaagtgtaacagcgccgtgtggaaggccgtgcgtgacttgcccgtcgttggggattggcggggcaaccc |
49041052 |
T |
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| Q |
319 |
ctgggatgactctgttcataagtatcccgttagtgtccctgtctctg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49041051 |
ctgggatgactctgttcataagtatcccgttagtgtccctgtttctg |
49041005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 49040232 - 49040316
Alignment:
| Q |
188 |
gaggcaaagggcagggttgcaaaaggggatcgggtctggcagattgcatttgggtcgggttttaagtgtaacagcgccgtgtgga |
272 |
Q |
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| T |
49040232 |
gaggccaagggtagagtttcaaagggggatagggtgtggcagattgcatttggggcaggttttaaatgtaacagtgccgtatgga |
49040316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 31333864 - 31333916
Alignment:
| Q |
24 |
tagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
76 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||| | |||||| |
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| T |
31333864 |
tagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag |
31333916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 15239454 - 15239692
Alignment:
| Q |
20 |
aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccgt |
119 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||| | | ||||| |||||||||||||| | |
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| T |
15239454 |
aaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatggaaccat |
15239553 |
T |
|
| Q |
120 |
ctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggcagggttgcaaaaggggatcg |
219 |
Q |
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| ||||||| ||| |||||||||| |||||||| || ||||| | ||||||||| ||||||||||||| || || || ||| || |||||| ||| | |
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| T |
15239554 |
caaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatag |
15239653 |
T |
|
| Q |
220 |
ggtctggcagattgcatttgggtcgggttttaagtgtaa |
258 |
Q |
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||||| ||||||||||| || |||||||||||||| |
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| T |
15239654 |
aacttggcaaattgcatttggttctggttttaagtgtaa |
15239692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 34053153 - 34053404
Alignment:
| Q |
20 |
aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatggaaccgt |
119 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| || |||| |||||| | || ||||| |||||||||||||| | |
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| T |
34053153 |
aaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatggaaccat |
34053252 |
T |
|
| Q |
120 |
ctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggcagggttgcaaaaggggatcg |
219 |
Q |
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| | ||||| || |||||||||| || ||||| || ||||| ||||||||||| ||||||||||||| || || || ||| || |||||| ||| | |
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| T |
34053253 |
caagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaagggaggattagaaaaggtgatag |
34053352 |
T |
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| Q |
220 |
ggtctggcagattgcatttgggtcgggttttaagtgtaacagcgccgtgtgg |
271 |
Q |
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| T |
34053353 |
gacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtgg |
34053404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 50087357 - 50087288
Alignment:
| Q |
25 |
agcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa |
94 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| | ||||| |||||||||| || |||||||||||| |
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| T |
50087357 |
agcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaa |
50087288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 23499324 - 23499272
Alignment:
| Q |
24 |
tagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
76 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||| | |||||| |
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| T |
23499324 |
tagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag |
23499272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 26453342 - 26453392
Alignment:
| Q |
26 |
gcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
76 |
Q |
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|||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
26453342 |
gcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag |
26453392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 23271614 - 23271550
Alignment:
| Q |
29 |
tttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttca |
93 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || || | |||||||| |||||||||||||| |
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| T |
23271614 |
tttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttca |
23271550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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