View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12726_low_3 (Length: 341)

Name: NF12726_low_3
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12726_low_3
NF12726_low_3
[»] scaffold0014 (2 HSPs)
scaffold0014 (172-330)||(83014-83171)
scaffold0014 (106-147)||(82973-83014)
[»] chr7 (2 HSPs)
chr7 (1-64)||(31209876-31209939)
chr7 (1-57)||(31206445-31206501)
[»] chr4 (3 HSPs)
chr4 (1-64)||(6671192-6671255)
chr4 (3-56)||(895710-895763)
chr4 (1-55)||(6667529-6667583)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-55)||(26118-26172)
[»] chr2 (1 HSPs)
chr2 (1-55)||(1043612-1043666)
[»] chr6 (1 HSPs)
chr6 (106-147)||(34233954-34233995)
[»] chr5 (1 HSPs)
chr5 (1-47)||(31307214-31307260)
[»] chr8 (1 HSPs)
chr8 (8-64)||(21185110-21185166)


Alignment Details
Target: scaffold0014 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 83014 - 83171
Alignment:
Q  172 taaattcggttgttgatatctcggagaatgagaggtggaatggcaaaatgtttatcatagctggaaattttcaataatggcgtggcgaactttcgtgtac 271  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||     
T  83014 taaattccgttgttgatatctcggagaatgagaggtggaatggcaaaatgtttatcaaagctgaaaattttcaatagt-gcgtggcgaactttcgtgtat 83112  T
Q  272 aaggaaatgacaaataagtctatgcaaattatattagacatacgtcgtcacacaggttc 330  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  83113 aaggaaatgacaaataagtctatgcaaattatattagatatacatcgtcacataggttc 83171  T

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Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 82973 - 83014
Alignment:
Q  106 gtactctaacttccagatcaatcaccacgattcgtaacaact 147  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  82973 gtactctaatttccagatcaatcaccacgattcgtaacaact 83014  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31209939 - 31209876
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 64  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  31209939 atttatatatgatgattattatttgtagataactcttatgactaattctacaacaatcttgagg 31209876  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31206501 - 31206445
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaacaat 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  31206501 atttatatatgatgattattatttgtagataattcttatgactaattctacaacaat 31206445  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6671255 - 6671192
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 64  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  6671255 atttatatatgatgattatgatttttggataattcttacgactaattatacaacaatcttgagg 6671192  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 895710 - 895763
Alignment:
Q  3 ttatatatgatgattattatttttagataattcttatgactaattatacaacaa 56  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  895710 ttatatatgatgattattatttgtagataattctcatgactaattatacaacaa 895763  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6667583 - 6667529
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaaca 55  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  6667583 atttatatttgatgattatgatttttggataattcttatgactaattatacaaca 6667529  T

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Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26172 - 26118
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaaca 55  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  26172 atttatatatgatgattattatttgtagatgattcttatgattaattatacaaca 26118  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1043612 - 1043666
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaattatacaaca 55  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  1043612 atttatatatgatgattattttttgtagataattcttatgactaattttacaaca 1043666  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 34233954 - 34233995
Alignment:
Q  106 gtactctaacttccagatcaatcaccacgattcgtaacaact 147  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  34233954 gtactctaatttccggatcaatcaccacgattcgtaacaact 34233995  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31307260 - 31307214
Alignment:
Q  1 atttatatatgatgattattatttttagataattcttatgactaatt 47  Q
    ||||||||||| ||||||||||||  ||||||||||||||| |||||    
T  31307260 atttatatatgttgattattatttggagataattcttatgattaatt 31307214  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 21185166 - 21185110
Alignment:
Q  8 tatgatgattattatttttagataattcttatgactaattatacaacaatcttgagg 64  Q
    |||| ||||||||||||  ||| ||||| |||||||| || ||||||||||||||||    
T  21185166 tatgctgattattatttagagagaattcatatgactacttttacaacaatcttgagg 21185110  T

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