View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12726_low_4 (Length: 315)
Name: NF12726_low_4
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12726_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 37338066 - 37338235
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37338066 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttc |
37338165 |
T |
|
| Q |
231 |
tgtggaaaagtttgtctgcgaagaagtttgtcttatctgacccaaagtccagtttctgtagctccttcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37338166 |
tgtggaaaagtttgtctgcgaagaagtttgtcttatctgacccaaagtccagtttctgtagctccttcct |
37338235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 11300106 - 11299946
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11300106 |
caagtcgtgcgtctgtgtagacagcctatcacgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttc |
11300007 |
T |
|
| Q |
231 |
tgtggaaaagtttgtctgcgaagaagtttgtcttatctgacccaaagtccagtttctgtagctcct |
296 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
11300006 |
tgtggagaagtttgtctttgaagaagtttg-----tctgacccaaaatccagtttttgtagctcct |
11299946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 37337947 - 37337985
Alignment:
| Q |
12 |
ataggacgtacaccatagattgtgaagttgattgtgtgg |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37337947 |
ataggacgtacaccatagattgtgaagttgattgtgtgg |
37337985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 11300223 - 11300187
Alignment:
| Q |
14 |
aggacgtacaccatagattgtgaagttgattgtgtgg |
50 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11300223 |
aggacgtacaccatagattgcgaagttgattgtgtgg |
11300187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 47968015 - 47967880
Alignment:
| Q |
161 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
47968015 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctgtgaagaagtttg |
47967916 |
T |
|
| Q |
261 |
tcttatctgacccaaagtccagtttctgtagctcct |
296 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
47967915 |
tcttatccgacccaaaatccagtttctgtagctcct |
47967880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 15296897 - 15297049
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15296897 |
caagtcgtacgtctttgtagaca-cctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttc |
15296995 |
T |
|
| Q |
231 |
tgtggaaaagtttgtctgcgaagaagtttgtcttatctgacccaaagtccagtttctgtagctccttcct |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15296996 |
tgtgg----------------agaagtttgtcttatctgacccaaagtccagtttctgtagctccttcct |
15297049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University