View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12726_low_9 (Length: 247)
Name: NF12726_low_9
Description: NF12726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12726_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 47 - 247
Target Start/End: Original strand, 3168571 - 3168771
Alignment:
| Q |
47 |
ctcaaaataatattataattagggacagctaaatactatgattagatatccaaaagttcaatggtctaattacaaattattcacaactaatgagggacag |
146 |
Q |
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| T |
3168571 |
ctcaaaataatattataattagggacagctaaatactatgattagatatccaaaagttcaatggtctaattacaaattattcacaactaatgagggacag |
3168670 |
T |
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| Q |
147 |
gatttggatgctgcttcaatgttttattatacatagcatccgtagaatttggagaatttgttcttagtgcactgagttggatcctgcttctgtgctgctc |
246 |
Q |
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| T |
3168671 |
gatttggatgctgcttcaatgttttattatacatagcatccgtagaatttggagaatttgttcttagtgcactgagttggatcctgcttctatgttgctc |
3168770 |
T |
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| Q |
247 |
c |
247 |
Q |
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| T |
3168771 |
c |
3168771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 1646503 - 1646322
Alignment:
| Q |
64 |
attagggacagctaaatactatgattagatatccaaaagttcaatggtctaattacaaattattcacaactaatgagggacaggatttggatgctgcttc |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
1646503 |
attagggacagctaaatactatgattagatatccaaaagttcaatggtctaattacaaattattcacaactaatgagggacagga-ttggatcctgcttc |
1646405 |
T |
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| Q |
164 |
aatgttttattatacatagcatccgtagaatttggagaatttgttcttagtgcactgagttggatcctgcttctgtgctgctcc |
247 |
Q |
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| T |
1646404 |
aatg-tttattatacatagcatccgtagaatttggagaatttgttcttagtgcactgagttggatcgtgcttcagtgttgctcc |
1646322 |
T |
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