View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_high_2 (Length: 406)
Name: NF12727_high_2
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 6928809 - 6928550
Alignment:
| Q |
20 |
ctgcatatgtgccaaattgaaaattgcatatcaaattattgagatgtataattggtcacaaaattgcttcattctcaagtaaattacaacatccaggcct |
119 |
Q |
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| T |
6928809 |
ctgcatatgtgccaaagtgaaaattgcatatcaaattattgagatgtataattggtcacaaaaatgcttcattcttaagtaaattacaacatctatgcct |
6928710 |
T |
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| Q |
120 |
tactcattgacatattggttcaaataacatcctgttattctatctatgctttgtctgttctaaatggatccaaaagaatttgataaataatgccaataat |
219 |
Q |
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| T |
6928709 |
tactcattgacatattggttcaaataacatcctgttattctatctatgctttgtctgtcctaaatggacccaaaagaatttgataaataatagcaataat |
6928610 |
T |
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| Q |
220 |
tagacagtgtactggtctgctttatagcttgatctctcatcattaaatatatcaaaatat |
279 |
Q |
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| T |
6928609 |
tggaaagtgtcctgatttgctttatagctttatctctcataatcaaatagatcaaaatat |
6928550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 6928534 - 6928486
Alignment:
| Q |
348 |
tctctaagaactaatgcaagcctgaatttcttccaatgtttttcctttg |
396 |
Q |
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| T |
6928534 |
tctctaagaactaatgcaagcctggatttcttccaatgttttgcctttg |
6928486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 396
Target Start/End: Complemental strand, 49134748 - 49134719
Alignment:
| Q |
367 |
gcctgaatttcttccaatgtttttcctttg |
396 |
Q |
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| T |
49134748 |
gcctgaatttcttccaatgtttttcctttg |
49134719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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