View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_high_5 (Length: 312)
Name: NF12727_high_5
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 32482798 - 32483099
Alignment:
| Q |
1 |
atgcatgctgcacggccgttcttcccgcgagatctctacggtccaggagttggtttaggtgttggaccaagcagggtttcatcagatgatcatgaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482798 |
atgcatgctgcacggccgttcttcccgcgagatctctacggtccaggagttggtttaggtgttggaccaagcagggtttcatcagatgatcatgaacatc |
32482897 |
T |
|
| Q |
101 |
aatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaagaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482898 |
aatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaagaaaga |
32482997 |
T |
|
| Q |
201 |
ttgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaaagcacttgggttcctgcttctagacgcagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32482998 |
ttgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaaagcacttgggttcctgcttctagacgccgtgaa |
32483097 |
T |
|
| Q |
301 |
cg |
302 |
Q |
| |
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|| |
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| T |
32483098 |
cg |
32483099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 8101876 - 8102004
Alignment:
| Q |
163 |
ataagttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatg |
262 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||| | ||||||||||||| |
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| T |
8101876 |
ataagttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatg |
8101975 |
T |
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| Q |
263 |
ttaaaagcacttgggttcctgcttctaga |
291 |
Q |
| |
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|||| || ||||||||||||||| ||||| |
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| T |
8101976 |
ttaagagtacttgggttcctgctgctaga |
8102004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 7418652 - 7418527
Alignment:
| Q |
169 |
tgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
7418652 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
7418553 |
T |
|
| Q |
269 |
gcacttgggttcctgcttctagacgc |
294 |
Q |
| |
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| ||||||||||| ||| ||| |||| |
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| T |
7418552 |
gtacttgggttccagctgctaaacgc |
7418527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 52767699 - 52767564
Alignment:
| Q |
168 |
ttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaa |
267 |
Q |
| |
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|||||| || |||||||||||||| |||||||||||| || | ||||| |||||||||||||| ||||| || |||||||||||||| |||||||| |
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| T |
52767699 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgtcaaacacatgttaag |
52767600 |
T |
|
| Q |
268 |
agcacttgggttcctgcttctagacgcagtgaacga |
303 |
Q |
| |
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|| ||||||||||| ||| ||| |||| |||||||| |
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| T |
52767599 |
agtacttgggttcccgctgctaaacgccgtgaacga |
52767564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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