View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_low_1 (Length: 452)
Name: NF12727_low_1
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 35532031 - 35532465
Alignment:
| Q |
11 |
acatcaagttcaatgcctccttagaagatacttttatatggagtcataacataaacgacacttacacaactaaaagcgggtattcttggttgatttcaca |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
35532031 |
acatcaagttcaatgcctccttagaagatacttttatatggagtcataacataaacgacacttacacaactaaaagcgggtattctttgttgatttctca |
35532130 |
T |
|
| Q |
111 |
cttggaacatgtcgagattcctaatcctcctctttcttggactttgatttggaagcttcagctttcggaaaagattaaatttctcttttggttggcttgc |
210 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35532131 |
tttggaacatgtcgacattcctaatcctcctctttcttggacttggatttggaagcttcaactttcggaaaagattaaatttctcttttggttggcttgc |
35532230 |
T |
|
| Q |
211 |
catgactcggtgcctactctttccttgcttaacaacatacacatggctcaatctgcaatatgtacaaggcatggccttcaaaatgagacttttcttcatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35532231 |
catgactcggtgcctactctttccttgcttaacaacataaacatggctcaatctgcaatatgtacaaggcatggccttcaaaatgagacttttcttcatt |
35532330 |
T |
|
| Q |
311 |
gtgttcgagattgcaaccactctcgaattttgtggcagcatgtcgatttcaatcaaccgcatttcttctcaaatgaagtgactcatgattggctcaaagt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35532331 |
gtgttcgagattgcaaccactctcgaattttgtggcagcatgttgatttcaatcaaccgcatttcttctcaaatgaagtgactcatgattggctcaaagt |
35532430 |
T |
|
| Q |
411 |
tggcttcatgggccctctctctttcctctctgcttct |
447 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||| |
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| T |
35532431 |
tggcttcatgggcc--ctctctttcctctttgcttct |
35532465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 34296305 - 34295870
Alignment:
| Q |
11 |
acatcaagttcaatgcctccttagaagatacttttatatggagtcataacataaacgacacttacacaactaaaagcgggtattcttggttgatttcaca |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || | || |||||||||||||||||||||||||| |||||| | |||||||||||||||||| || |
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|
| T |
34296305 |
acatcaagtccaatgcctccttagaagatactttcatctagaatcataacataaacgacacttacacaattaaaagtgagtattcttggttgatttctca |
34296206 |
T |
|
| Q |
111 |
cttggaacatgtcgagattcctaatcctcctctttcttggactttgatttggaagcttcagctttcggaaaagattaaatttctcttttggttggcttgc |
210 |
Q |
| |
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| ||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| | |||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
34296205 |
catggaacacgtcgacattcctaattctcctctttcttggacttgaatttggaagcttcggttttcagaaaatattaaattcctcttttggttggcttg- |
34296107 |
T |
|
| Q |
211 |
catgactcggtgcctactctttccttgcttaacaacatacacatggctcaatctgcaatat----gtacaaggcatggccttcaaaatgagacttttctt |
306 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| | |||||||||||| |||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
34296106 |
----actcggcgcctactctttccttgctcaacaacagaatgatggctcaatctacaatatatatgtacaaggtgcgaccttcaaaatgagacttttctt |
34296011 |
T |
|
| Q |
307 |
cattgtgttcgagattgcaaccactctcgaattttgtggcagcatgtcgatttcaatcaaccgcatttcttctcaaatgaagtgactcatgattggctca |
406 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||| ||||| |
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|
| T |
34296010 |
cattgtgttcgagattgtaaccattctcgaaatttatggcagcatgtcggtttcaatcaactacatttcttctcgaatgaagcgactcatgatttgctca |
34295911 |
T |
|
| Q |
407 |
aagttggcttcatgggccctctctctttcctctctgcttct |
447 |
Q |
| |
|
||||||||| ||| || |||||||||||||||| ||||||| |
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|
| T |
34295910 |
aagttggctccattgggcctctctctttcctctttgcttct |
34295870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 38587059 - 38587165
Alignment:
| Q |
133 |
aatcctcctctttcttggactttgatttggaagcttcagctttcggaaaagattaaatttctcttttggttggcttgccatgactcggtgcctactcttt |
232 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
38587059 |
aatcctcctccctcttgttcttggatttggaagcttcatatgccggaaaagattaaattattcttttggttggcttgccacaactcggtgccgactcttt |
38587158 |
T |
|
| Q |
233 |
ccttgct |
239 |
Q |
| |
|
|| |||| |
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|
| T |
38587159 |
ccatgct |
38587165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 33860539 - 33860431
Alignment:
| Q |
131 |
ctaatcctcctctttcttggactttgatttggaagcttcagctttcggaaaagattaaatttctcttttggttggcttgccatgactcggtgcctactct |
230 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
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| T |
33860539 |
ctaatcctcctccttcttggtcttggatttggaagcttcatctgccggaaaagattaaattcttcttttggttggcttgccacaactcggtgccgactct |
33860440 |
T |
|
| Q |
231 |
ttccttgct |
239 |
Q |
| |
|
|||| |||| |
|
|
| T |
33860439 |
ttccatgct |
33860431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 27154576 - 27154634
Alignment:
| Q |
181 |
aagattaaatttctcttttggttggcttgccatgactcggtgcctactctttccttgct |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | | |||||||||| | |||||||| |
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|
| T |
27154576 |
aagattaaatttctcttttggttggcatgccacaattaggtgcctactatatccttgct |
27154634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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