View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_low_2 (Length: 426)
Name: NF12727_low_2
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 43107502 - 43107911
Alignment:
| Q |
12 |
agagatgtatatgatggaaaaaataatagataaattttaatattcttgggcactatttt------cga--ccgaacccnnnnnnnnngttcaagatatat |
103 |
Q |
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| T |
43107502 |
agagatgtatatgatggaaaaaataatagataaattttaatattcttgggcactattttttgggtcgatacccaaccctttttttttgtttaagatatat |
43107601 |
T |
|
| Q |
104 |
ttttgaaatttgctctttagaccccatgttgctcatagccccccaaaaacagaaaatactcctatcaacgcctaccagtgtcattacctctcggaagcta |
203 |
Q |
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| T |
43107602 |
ttttgaaatttgctctttagaccccatgttgctcatagccccccaaaaacagaaaatactcctatcaacgcctaccagtgtcattacctctcggaagcta |
43107701 |
T |
|
| Q |
204 |
ttttccacttgcaagctatt-ggatgatagaatacggtagccggtagatacctatattatatacattagaaattagtttctgtcatacttctttttcttc |
302 |
Q |
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| T |
43107702 |
ttttccacttgcaagctattgggatgatagaatacggtagccggtaggtacctatattatatacattagaaattagtttctgtcatacttctttttcttc |
43107801 |
T |
|
| Q |
303 |
aacactcaacctccaaaaccattcaaagnnnnnnnnnnnnnnnnnnnncttcacaaaatttgtgtctcattacataatccttccattcttatacgctaca |
402 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43107802 |
aacactcaacctccaaaaccattcaaagtttatttattttatttttttcttcacaaaatttgtgtctcattacataatccttccattcttatacgctaca |
43107901 |
T |
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| Q |
403 |
tacactattt |
412 |
Q |
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| T |
43107902 |
tacactattt |
43107911 |
T |
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