View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_low_4 (Length: 371)
Name: NF12727_low_4
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 356
Target Start/End: Original strand, 48891794 - 48892127
Alignment:
| Q |
23 |
acctttacctagctttctgtgtgacccttctcctattaggtttgatggatgaaagttgttggttgcatcttcgatttcttctattgtgaaaatgctgtaa |
122 |
Q |
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| T |
48891794 |
acctttacctagctgtctgtgtgacccttctcctattaggtttgatggatgaaagttgttggttgcatcttcgatttcttctattgtgaaaatgctgtaa |
48891893 |
T |
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| Q |
123 |
ggtcgtaatccaagtgcagctagcctcattagccgaggaacagtactccttgcataaatatttggttttaaatttgcagtgatagaagctctatcataaa |
222 |
Q |
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| T |
48891894 |
ggtggtaatccaagtgcagctagcctcattagccgaggaacaatactccttgcataaatatttggttttaaatttgtagtgatagaaactctatcataaa |
48891993 |
T |
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| Q |
223 |
ctgttctacctattttattatttgcttttcttttttggactttctcaaaatgaacagaaaaaatagaatcaaaagccctgcaattcctacaaaacctcca |
322 |
Q |
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| T |
48891994 |
ctgttctacctattttattatttgcttttcttttttggactttctcaaaatgaacagaaaaaatataatcaaaagccctgcaattcctacaaaacctcca |
48892093 |
T |
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| Q |
323 |
atagtatcaagtattagtcctagttgctcctttg |
356 |
Q |
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| T |
48892094 |
atagtatcaagtattagtcctagttgctcctttg |
48892127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 16962823 - 16962952
Alignment:
| Q |
42 |
tgtgacccttctcctattaggtttgatggatgaaagttgttggttgcatcttcgatttcttctattgtgaaaatgctgtaaggtcgtaatccaagtgcag |
141 |
Q |
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| T |
16962823 |
tgtgatccttctcctattagatttgatggatcaaagttgttggttgcatctccaatttcttctattgtgaaaatgttgtatggtggtaatccaagtgtag |
16962922 |
T |
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| Q |
142 |
ctagcctcattagccgaggaacagtactcc |
171 |
Q |
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| T |
16962923 |
ttagcctcattagctggggaacattactcc |
16962952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 16215565 - 16215698
Alignment:
| Q |
42 |
tgtgacccttctcctattaggtttgatggatgaaagttgttggttgcatcttcgatttcttctattgtgaaaatgctgtaaggtcgta----atccaagt |
137 |
Q |
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| T |
16215565 |
tgtgatccttctcctattagatttgatggatcaaagttgttggttgcatctccaatttcttctattgagaaaatgttgtatggtggtaatccatccaagt |
16215664 |
T |
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| Q |
138 |
gcagctagcctcattagccgaggaacagtactcc |
171 |
Q |
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| T |
16215665 |
gtagttagcctcattagctgaggaacattactcc |
16215698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 16963141 - 16963210
Alignment:
| Q |
256 |
tttggactttctcaaaatgaacagaaaaaatagaatcaaaagccctgcaattcctacaaaacctccaata |
325 |
Q |
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| T |
16963141 |
tttggactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattccaacaaaacctccaata |
16963210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 16215886 - 16215975
Alignment:
| Q |
260 |
gactttctcaaaatgaacagaaaaaatagaatcaaaagccctgcaattcctacaaaacctccaatagtatcaagtattagtcctagttgc |
349 |
Q |
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| T |
16215886 |
gactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagttgc |
16215975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 24826822 - 24826749
Alignment:
| Q |
42 |
tgtgacccttctcctattaggtttgatggatgaaagttgttggttgcatcttcgatttcttctattgtgaaaat |
115 |
Q |
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| T |
24826822 |
tgtgatccttctcctattaaatttgattggtcaaagttattggttgcatcttcaatttcttcttctgtgaaaat |
24826749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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