View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12727_low_7 (Length: 249)
Name: NF12727_low_7
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 48892410 - 48892173
Alignment:
| Q |
12 |
agagatggtagagaaattgcgtcagacatttccttgccaacttctatgcctttgttttgtgaatatatcttgtagttcttccttaacatttgttgatctc |
111 |
Q |
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| T |
48892410 |
agagatagtagagaaattgcgtcagacatttccttgccaacttctatgcctttgttttgtgaatatatcttgtagttcttccttaacattttttgatctc |
48892311 |
T |
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| Q |
112 |
tcgcacaaacttcgggaggaaaattgccatcctgcattgattcaaagtcctcaaatcgaaaaatagtttattctggcaattgttgtttgtcaactagaag |
211 |
Q |
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| T |
48892310 |
tcgcacaaacttcgggaggaaaattgccatcctgcattgattcaaagtcctcaaatcgaaaaatagtttattctggcaattgttgtttgtcaactagaag |
48892211 |
T |
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| Q |
212 |
tttcagtgatcaacatccatcttcatattgcaagaaat |
249 |
Q |
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| T |
48892210 |
tttcagtgatcaacatccatcttcatattgcaagaaat |
48892173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 16963466 - 16963289
Alignment:
| Q |
71 |
tgaatatatcttgtagttcttccttaacatttgttgatctctcgcacaaacttcggga-ggaaaattgccatcctgcattgattcaaa---gtcctcaaa |
166 |
Q |
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| T |
16963466 |
tgaatatatcttgtggttcttctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattgattcgacattgtcgttgaa |
16963367 |
T |
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| Q |
167 |
tcgaaaaatagtttattctggcaattgttgtttgtcaactagaagtttcagtgatcaacatccatcttcatattgcaagaa |
247 |
Q |
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| T |
16963366 |
tcgaacaatagtttattctggtaattgtt---tatcagcaagaaatgtcagtgatcaacattcatcttcacattgcaagaa |
16963289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 16216109 - 16216030
Alignment:
| Q |
165 |
aatcgaaaaatagtttattctggcaattgttgtttgtcaactagaagtttcagtgatcaacatccatcttcatattgcaagaa |
247 |
Q |
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| T |
16216109 |
aatcgaacaatagtttattctggtaattgtt---tgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaagaa |
16216030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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