View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12727_low_8 (Length: 232)
Name: NF12727_low_8
Description: NF12727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12727_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 33049126 - 33049310
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttactaaataaagagaagaagattcatatgattcactattgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33049126 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgctactaaataaagagaagaagattcatatgattcactattgct |
33049225 |
T |
|
| Q |
101 |
aatcttaaaaataattgcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagttg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33049226 |
aatcttaaaaataattgcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagttg |
33049310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 33062908 - 33063085
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttact-aaataaagagaagaagattcatatgattcactattgc |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| || |||| ||| || |
|
|
| T |
33062908 |
caaataacaacttcattgattgcaatatggtatggttctcatagctttatatttctgttactaaaatgaatagaagaa-at-------attccctaatga |
33062999 |
T |
|
| Q |
100 |
taatcttaaaaataa--ttgcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagt |
183 |
Q |
| |
|
|| |||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33063000 |
tattcttcaaaacaaccatgcagtgcgaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagt |
33063085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33088839 - 33089017
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttacta-aataaagagaagaagattcatatgattcactattgc |
99 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| || |||| ||| || |
|
|
| T |
33088839 |
caaataacaacttcattgatcgcaatatggtatggttctcgtagctttatatttctgttactataatgaatagaagaa-------at-attccctaatga |
33088930 |
T |
|
| Q |
100 |
taatcttaaaaataat--tgcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagtt |
184 |
Q |
| |
|
|| |||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33088931 |
tattcttcaaaacaaccatgcagtgcgaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagtt |
33089017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33096335 - 33096513
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttacta-aataaagagaagaagattcatatgattcactattgc |
99 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| || |||| ||| || |
|
|
| T |
33096335 |
caaataacaacttcattgatcgcaatatggtatggttctcgtagctttatatttctgttactataatgaatagaagaa-------at-attccctaatga |
33096426 |
T |
|
| Q |
100 |
taatcttaaaaataat--tgcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagtt |
184 |
Q |
| |
|
|| |||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33096427 |
tattcttcaaaacaaccatgcagtgcgaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagtt |
33096513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33080367 - 33080558
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttact-aaataaagagaagaag-attcatatgattcactattg |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| ||| |||||||||| ||| ||| |||| ||||||| || ||||| ||||| |||||||| |
|
|
| T |
33080367 |
caaataacaacttcattgattgcaatatggtatgattcttatatctttatatttatgtcactgaaatgaagagaataaatattcacatgatccactattg |
33080466 |
T |
|
| Q |
99 |
ctaatcttaaaaat----aatt--gcagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagtt |
184 |
Q |
| |
|
| |||| |||| |||| |||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33080467 |
taattcttcaaaactaaaaattatgcagtgcaaacacagaattcatcgcttgcctgatcacttatggtcttagtgcagccgcaaggttagtt |
33080558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 33070675 - 33070868
Alignment:
| Q |
1 |
caaataacaatttcattgattgcaatatggtatggttctcatagctttatatttctgttact-aaataaagagaagaag-attcatatgattcactattg |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | || ||| |||||||||||||| ||| |||| ||| || || |||||||||||||||||||| |
|
|
| T |
33070675 |
caaataacaacttcattgattgcaatatggtatgatccttatatctttatatttctgtcactgaaatgtagataataaatattcatatgattcactattg |
33070774 |
T |
|
| Q |
99 |
ctaatcttaaaaat-----aattg--cagtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgcaaggttagttg |
185 |
Q |
| |
|
| |||| |||| ||||| ||||| |||||||||| ||| |||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
33070775 |
taattcttcaaaaactaaaaattgtgcagtgcaaacacagaactcaccgcttacctgatcatttatggtcttagtgcagccgcaaggttagttg |
33070868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 33049339 - 33049372
Alignment:
| Q |
184 |
tgacataagcattaagcactttaatctatgttct |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
33049339 |
tgacataagcattatgcactttaatctatgttct |
33049372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 18486033 - 18486087
Alignment:
| Q |
120 |
gtgaaaacacagaattcattgcttacatgatcacttatggtcttagtgcagctgc |
174 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18486033 |
gtgaaaacaaagaattcattgcttacatgatcacttatggtcttagtgcaactgc |
18486087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University