View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12728_high_1 (Length: 766)
Name: NF12728_high_1
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_1 |
 | |
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| [»] scaffold0035 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Original strand, 1748437 - 1749019
Alignment:
| Q |
11 |
aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
1748437 |
aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtcaaacattggt |
1748536 |
T |
|
| Q |
110 |
atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748537 |
atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa |
1748636 |
T |
|
| Q |
210 |
caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnn-gcctacaccagctagtgctaatataaactcggcta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
1748637 |
caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccattttttttttttttgcttacaccagctagtgctaatataaactcggcta |
1748736 |
T |
|
| Q |
309 |
catttggctctttcatccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1748737 |
catttggctctttcatccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaac |
1748836 |
T |
|
| Q |
408 |
caacaacaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748837 |
caacaacaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaag |
1748936 |
T |
|
| Q |
508 |
caaagcaagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748937 |
caaagcaagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
1749019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 128 - 480
Target Start/End: Complemental strand, 20686739 - 20686385
Alignment:
| Q |
128 |
atgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgtgg |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
20686739 |
atgaaactgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccaccaatttgattaacaacgacaactaaagctagtgtgg |
20686640 |
T |
|
| Q |
228 |
tagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnn--gcctacaccagctagtgctaatataaactcggctacatttggctctttcatc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
20686639 |
tagagcctgctgaagtagcacatgccataaccatctgtttttttttttgcttacaccagctagggctaatataaactcggctacatttggctctttgatc |
20686540 |
T |
|
| Q |
326 |
cgtttaccatgaagaaaatgacccaaaatctgattgaaaaaactttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaa |
425 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | | ||||| ||||||| |
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|
| T |
20686539 |
cttttaccatgaagaaaatgacccaaaatctgattgaaaaaactttacgttatgactcccatttagagaagcagtaacaaagaagcgacaatggcagtaa |
20686440 |
T |
|
| Q |
426 |
taacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaa |
480 |
Q |
| |
|
|||||||||||| ||||||| ||||||| | ||||||||| ||||||||||||| |
|
|
| T |
20686439 |
caacaacttatggctcctttacgatttgacgcaggtttcctggcaaatttggaaa |
20686385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 413 - 589
Target Start/End: Complemental strand, 20686368 - 20686192
Alignment:
| Q |
413 |
acaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaag |
512 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
20686368 |
acaatggcagtaacaacaacttatggctcctttatgatttgacgcaggtttcctggcaaatttggaaaaaatcatgatatagaatattgaaaaagcaaag |
20686269 |
T |
|
| Q |
513 |
caagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactc |
589 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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|
| T |
20686268 |
caggaacgacacaacatcaatatttcaaattataatcttcaaataatagcgaaaataaataacaaaagcagccactc |
20686192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 20686835 - 20686772
Alignment:
| Q |
11 |
aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgc |
74 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| || | |||||||||||| |||||||||||| |
|
|
| T |
20686835 |
aagcaaaggtagtataaaaacaataatttaattcgttagactcttaagattgcagtcaatttgc |
20686772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Original strand, 42383346 - 42383926
Alignment:
| Q |
11 |
aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42383346 |
aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtctaacattggt |
42383445 |
T |
|
| Q |
110 |
atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42383446 |
atttgttcttttccaaccatgaaattgaattaggcccttagatcttcatggtttacgacaatgcaaatgacttagccaccactaatttgattaacagcaa |
42383545 |
T |
|
| Q |
210 |
caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagctagtgctaatataaactcggctac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
42383546 |
caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccatttttttttttt-gcttacaccagctagtgctaatataaactcggctac |
42383644 |
T |
|
| Q |
310 |
atttggctctttcatccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383645 |
atttggctctttcatccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaacc |
42383744 |
T |
|
| Q |
409 |
aacaacaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383745 |
aacaacaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagc |
42383844 |
T |
|
| Q |
509 |
aaagcaagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383845 |
aaagcaagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
42383926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 629 - 691
Target Start/End: Original strand, 42387000 - 42387062
Alignment:
| Q |
629 |
aacaaacaaacgaagcaatcttatgtggattcagatcagaaaattgatacctgctccaatcga |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42387000 |
aacaaacaaacgaagcaatcttatgtggattcagatcagaaaattgatacctgctccaatcga |
42387062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 84872 - 84932
Alignment:
| Q |
440 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
84872 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
84932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 21988926 - 21989083
Alignment:
| Q |
186 |
caccactaatttgattaacaacaacaactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagc |
285 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||| |||||| |||| | | |||||||||||| |||||||||||| | | ||||||| |
|
|
| T |
21988926 |
caccaccagtttgattaacaacagcaactaaagttagtgtcgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccagc |
21989025 |
T |
|
| Q |
286 |
tagtgctaatataaactcggctacatttggctctttcatccgtttaccatgaagaaaa |
343 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
21989026 |
tagtgctgatataaacttagctacatttgactctttgatccttccaccatgaagaaaa |
21989083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 8944167 - 8944222
Alignment:
| Q |
173 |
caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt |
225 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
8944167 |
caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt |
8944222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 26887492 - 26887437
Alignment:
| Q |
173 |
caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt |
225 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
26887492 |
caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt |
26887437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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