View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_high_11 (Length: 365)
Name: NF12728_high_11
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 3856060 - 3856287
Alignment:
| Q |
18 |
catccaaggattagtgatgatggacaatctagagaaagatatgcactttgtcatgacatctttaacgttccttttggctcttttgatgttcaaagagagg |
117 |
Q |
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| T |
3856060 |
catccaaggattagtgatgatggacaatctagagaaagatatgcactttgtcatgacatctttaacgttccttttggctcttttgatgttcaaagagagg |
3856159 |
T |
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| Q |
118 |
caagaactcataggacggagtatagtttaagaaaccatgagctgatcctccttcttcgttgattttgaaagtnnnnnnnngggcttttgaaaaggagcaa |
217 |
Q |
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| T |
3856160 |
caagaactcatagaacggagtatagtttaagaaaccatgagctgatcctccttcttcgttgattttgaaagt-aaaaaaagggcttttgaaaaggagcaa |
3856258 |
T |
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| Q |
218 |
ttcttgaatggacacaagtatttggtcac |
246 |
Q |
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| T |
3856259 |
ttcttgaatggacacaagtatttggtcac |
3856287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 3856312 - 3856383
Alignment:
| Q |
285 |
taataattatgtttgaaggttggagttcctgtcatgttgcttcgcaacgttgatcaagcatctggtctctgc |
356 |
Q |
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| T |
3856312 |
taataattatgtttgaaggttggagttcatgtcatgttgcttcgcaacgttgatcaagcatctggtctctgc |
3856383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 46471350 - 46471415
Alignment:
| Q |
291 |
ttatgtttgaaggttggagttcctgtcatgttgcttcgcaacgttgatcaagcatctggtctctgc |
356 |
Q |
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| T |
46471350 |
ttatgtttgaaggttggagttcctgtcatgttgcttcgcaacgttgatcaagcatctggtctctgc |
46471415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 33446133 - 33446177
Alignment:
| Q |
297 |
ttgaaggttggagttcctgtcatgttgcttcgcaacgttgatcaa |
341 |
Q |
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| T |
33446133 |
ttgaaggttggtgttcctgttatgttgcttcgcaacgttgatcaa |
33446177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 43377752 - 43377706
Alignment:
| Q |
216 |
aattcttgaatggacacaagtatttggtcactctatttagtcacaca |
262 |
Q |
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| T |
43377752 |
aattcttggatggacacaagaatttggaccctctatttagtcacaca |
43377706 |
T |
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