View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_high_13 (Length: 353)
Name: NF12728_high_13
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_13 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 38251600 - 38251943
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251600 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
38251699 |
T |
|
| Q |
111 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251700 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatg |
38251799 |
T |
|
| Q |
211 |
catagaacaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
309 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251800 |
catagaacacccaaaaaaaacaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
38251899 |
T |
|
| Q |
310 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38251900 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
38251943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 43157942 - 43157599
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157942 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
43157843 |
T |
|
| Q |
111 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157842 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatctgagatatacagaaaattaccttgaaccagcattgaagtatg |
43157743 |
T |
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| Q |
211 |
catagaacaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
309 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157742 |
catagaacacccaaaaaaaacaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
43157643 |
T |
|
| Q |
310 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157642 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
43157599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 11475366 - 11475023
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475366 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
11475267 |
T |
|
| Q |
111 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatg |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11475266 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgatatatacagaaaattaccttgaaccagcattgaagtatg |
11475167 |
T |
|
| Q |
211 |
catagaacaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475166 |
catagaacacccaaaaaaaacaccagattcagtaaaagctcaaactcctataggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
11475067 |
T |
|
| Q |
310 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475066 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
11475023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 11503406 - 11503063
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11503406 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaatgatactaatcagaacctaggggtggaagaaatgccacaacgtagctgcagcaccacaa |
11503307 |
T |
|
| Q |
111 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatccgagatatacagaaaattaccttgaaccagcattgaagtatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
11503306 |
cagtccacaggcggaaaaccagctttgaactacgtagagaattacctcaaacttgatctgatatatacagaaaattaccttgaaccagcattgaagtatg |
11503207 |
T |
|
| Q |
211 |
catagaacaccc-nnnnnnncaccagattcagtaaaagctcaaactcctatgggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11503206 |
catagaacacccaaaaaaaacaccagattcagtaaaagctcaaactcctattggcagacagtcaagttcaacaggctacaatccagtagagttaacacac |
11503107 |
T |
|
| Q |
310 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503106 |
aatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
11503063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 49233770 - 49233810
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaa |
51 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49233770 |
agagaagaaattaaaaccaatatgttgcagctggaacacaa |
49233810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 49234341 - 49234381
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacacaa |
51 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49234341 |
agagaagaaattaaaaccaatatgttgcagctggaacacaa |
49234381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 14839296 - 14839257
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacaca |
50 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
14839296 |
agagaagaaaataaaaccgatatgttgcagctggaacaca |
14839257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 27962394 - 27962433
Alignment:
| Q |
11 |
agagaagaaaacaaaaccaatatgttgcagctggaacaca |
50 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
27962394 |
agagaagaaaataaaaccgatatgttgcagctggaacaca |
27962433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 18330745 - 18330801
Alignment:
| Q |
297 |
agagttaacacacaatccaaaaacaaaagaatcaagatttgttacacactctaaaat |
353 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
18330745 |
agagttaaaacacaataaaaaaacaaaagcatcaacatttgttgcacacactaaaat |
18330801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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