View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_high_25 (Length: 248)
Name: NF12728_high_25
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 52385806 - 52386024
Alignment:
| Q |
19 |
gtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaa |
118 |
Q |
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| T |
52385806 |
gtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaa |
52385905 |
T |
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| Q |
119 |
ccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatgg |
218 |
Q |
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| T |
52385906 |
ccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatgg |
52386005 |
T |
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| Q |
219 |
aagagaccccggcgttcat |
237 |
Q |
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| T |
52386006 |
aagagaccccggcgttcat |
52386024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
154 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
236 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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