View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_high_29 (Length: 221)
Name: NF12728_high_29
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 41851343 - 41851207
Alignment:
| Q |
18 |
caaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaattcaaaatcattcaacatttgtccaaaattt |
117 |
Q |
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| T |
41851343 |
caaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtgccattcatctaaattcaaaatcattcaacatttgtccaaaattt |
41851244 |
T |
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| Q |
118 |
tgacataaaattcatacatgattcaacctcaccaaca |
154 |
Q |
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| T |
41851243 |
tgacataaaattcatacatgattcaacctcaccaaca |
41851207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 41851211 - 41851170
Alignment:
| Q |
171 |
caacacaaaattaactattcattccagcatttcatctcactc |
212 |
Q |
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| T |
41851211 |
caacacaaaattaactattcattccagcatttcatcacactc |
41851170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 49559704 - 49559631
Alignment:
| Q |
19 |
aaacacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaattcaaa |
92 |
Q |
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| T |
49559704 |
aaacacattcaacactcaaaatttattcaacattcaaaatgacataaaacttgtgacattcaaataaattcaaa |
49559631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 6562879 - 6562808
Alignment:
| Q |
21 |
acacattgaacacttaaaattcattcaacattgaaaatgacataaaacttgtggcattcatctaaattcaaa |
92 |
Q |
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| T |
6562879 |
acacattcaacactcaaaatttattgaacatttaaaatgatataaaatttgtgacattcaactaaattcaaa |
6562808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 33229711 - 33229668
Alignment:
| Q |
20 |
aacacattgaacacttaaaattcattcaacattgaaaatgacat |
63 |
Q |
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| T |
33229711 |
aacacattcaacactcaaaattcattcaacattcaaaatgacat |
33229668 |
T |
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