View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_high_4 (Length: 582)
Name: NF12728_high_4
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 566
Target Start/End: Original strand, 14003624 - 14004177
Alignment:
| Q |
13 |
agcacagaaaacccaccaagacatttcaaatctaacaatttaattttaactaactttgtagtttcattcggacatggccaattgtcaaagagaacagagg |
112 |
Q |
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| T |
14003624 |
agcacagaaaacccaccaagacatttcaaatctaacaatttaattttaactaactttgtagtttcattcggacatggtcaattgtcaaagagaacagagg |
14003723 |
T |
|
| Q |
113 |
gtccatatgcttcaattttaatctcatattgttacaaatcatttctttaacttgtgtaggttcaatttgactgtaagtgatcgtagatgtggagaaaatg |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003724 |
gtccatatgcttcaattttattctcatattgttacaaatcatttctttaacttgtgtaggttcaatttgactgtaagtgatcgtagatgtggagaaaatg |
14003823 |
T |
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| Q |
213 |
ctgaagttggcgtcaaccactattaacattgtatgcaaaacgcacttctaagagggtcacacacttatggggcttttcataaaaaaccattgatatacat |
312 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003824 |
ctgaagttggcgtcagccaccattaacattgtatgcaaaacgcacttctaagagggtcacacacttatggggcttttcataaaaaaccattgatatacat |
14003923 |
T |
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| Q |
313 |
attgagcaactaaaaataacattaggataccaaatagaaagcaaaatagggaaaacataaaacaccaagaactaaatagatgttagacctcaaaccatca |
412 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003924 |
attgagcaactaaatataacattaggataccaaatagaaagcaaaatagggaaaacataaaacaccaagaactaaatagatgttagacctcaaaccatca |
14004023 |
T |
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| Q |
413 |
atgaagagaccaaaccacaaaaatgctatgaggacactttgtgtgtatctgcaagtgggggcaatcacgtgctaagtcgggttagaggcactccatcaaa |
512 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004024 |
atgaagagagcaaaccacaaaaatgctatgaggacactttgtgtgtatctgcaagtgggggcaatcacgtgctaagtcgggttagaggcactccatcaaa |
14004123 |
T |
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| Q |
513 |
attatggcaatgaggagaagttttgcgccactgtgagatgtgatgacttgatag |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14004124 |
attatggcaatgaggagaagttttgcgccactgtgagatgtgatgacttgatag |
14004177 |
T |
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