View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_12 (Length: 365)
Name: NF12728_low_12
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 39581750 - 39581403
Alignment:
| Q |
1 |
cagaacttgccaaagcattgtataacaaaattgtgcaccaatttgaagctgcaagttttattgccaatgttagagagaaatcaaacaaaatgaacggccc |
100 |
Q |
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| T |
39581750 |
cagaacttgccaaagcattgtataacaaaattgtgcaccaatttgaagctgcaagttttattgccaatgttagagagaaatcaaacaaaatcaacggccc |
39581651 |
T |
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| Q |
101 |
agaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagctt |
200 |
Q |
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| T |
39581650 |
agaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaatacaagctt |
39581552 |
T |
|
| Q |
201 |
ggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtaggg |
300 |
Q |
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| T |
39581551 |
ggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtacgg |
39581452 |
T |
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| Q |
301 |
tcattataactacaagggacaaatgtttgcttgtaggtactcattcttt |
349 |
Q |
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| T |
39581451 |
tcattataactacaagggacaaaggtttgcttgtaggtactcattcttt |
39581403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 39620209 - 39620557
Alignment:
| Q |
1 |
cagaacttgccaaagcattgtataacaaaattgtgcaccaatttgaagctgcaagttttattgccaatgttagagagaaatcaaacaaaatgaacggccc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||| |
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| T |
39620209 |
cagaacttgccaaatcattgtataacaaaattgtgcaccaatttgaagctgcaagttttcttgccaacgttagagagaaatcaaacaaaatcaatggcct |
39620308 |
T |
|
| Q |
101 |
agaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagctt |
200 |
Q |
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||||||| | || |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||| | ||||| |
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| T |
39620309 |
agaagatcttcaaaagacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctg |
39620408 |
T |
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| Q |
201 |
ggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtaggg |
300 |
Q |
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| T |
39620409 |
ggcaataaaaaggttcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtagga |
39620508 |
T |
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| Q |
301 |
tcattataactacaagggacaaatgtttgcttgtaggtactcattcttt |
349 |
Q |
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| T |
39620509 |
tcattataactacaagggacaaaggtttgctcataggtactcattcttt |
39620557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 7755099 - 7755053
Alignment:
| Q |
39 |
caatttgaagctgcaagttttattgccaatgttagagagaaatcaaa |
85 |
Q |
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| T |
7755099 |
caatttgaagctgcgagttttcttgctaatgttagagaaaaatcaaa |
7755053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 7827978 - 7828036
Alignment:
| Q |
261 |
ttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactacaaggga |
319 |
Q |
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| T |
7827978 |
ttggctggaggacgtgattggtttggttctggtagtaggatcataataacaacaaggga |
7828036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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