View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_15 (Length: 332)
Name: NF12728_low_15
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 316
Target Start/End: Original strand, 679394 - 679705
Alignment:
| Q |
5 |
caaacaaacacagagacgcaggcagaagcagaaaaagaggcttatcgatgtcgcagtctttggagcttctgcttatacaattcttgatgccagataacga |
104 |
Q |
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| T |
679394 |
caaacaaacacagagacgcaggcagaagcagaaaaagaggcttatcgatgtcgcagtctttggagcttctgcttatacaattcttgatgccagataacga |
679493 |
T |
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| Q |
105 |
cgcacgccgtcaagctgaagatcaaatcaaacgcctcgccaaagatcctcaagtcgtccccgctttgattcatcacctccgcaccgctaaaacccctaac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679494 |
cgcacgccgtcaagctgaagatcaaatcaaacgcctcgccaaagatcctcaagtcgtccccgctttgattcatcacctccgcaccgctaaaacccctaac |
679593 |
T |
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| Q |
205 |
gtccgtcaactctccgccgtcctcctccgtaagaaaatcaccggtcattggtctaaactctctcctcaaatcaaacaactcgttaaacaatctctcattg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679594 |
gtccgtcaactctccgccgtcctcctccgtaagaaaatcaccggtcattggtctaaactctctcctcaaatcaaacaactcgttaaacaatctctcattg |
679693 |
T |
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| Q |
305 |
atagcatcacca |
316 |
Q |
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|||||||||||| |
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| T |
679694 |
atagcatcacca |
679705 |
T |
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