View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_19 (Length: 295)
Name: NF12728_low_19
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 29922578 - 29922844
Alignment:
| Q |
15 |
gaaccaatactctctacgccaattctcttgatacccatcatgggttaaagaagtctcagccaaacagatcaatccattgcatgaaccaattatacgagag |
114 |
Q |
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| T |
29922578 |
gaaccaatactctctacgccaattctcttgatacccatcatgggttaaagaagtctcagccaaacaaatcaatccattgcatgaaccaattatacgagag |
29922677 |
T |
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| Q |
115 |
catatgtcgttgttgacatgatagtaagtgacactattgtaaggatcatctaaaagaagggtgaatgacgggttatctagtaaacgacttatagggtatg |
214 |
Q |
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| T |
29922678 |
catatgtcgttgttgacatgatagtaagtgacactattgtaaggatcatctaaaagaagggtgaatgacgggttatctagtaaacgacttatagggtatg |
29922777 |
T |
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| Q |
215 |
gaacgagattgtaatccctctcagattcatcgtcaataccatagaatgactctccagggataaattt |
281 |
Q |
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| T |
29922778 |
gaacgagattgtaatccctctcagattcatcgtcaataccatagaatgactctccagggataaattt |
29922844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 29880724 - 29880678
Alignment:
| Q |
71 |
cagccaaacagatcaatccattgcatgaaccaattatacgagagcat |
117 |
Q |
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| T |
29880724 |
cagccaaacagatcaaaccattgcaggtaccaactatacgagagcat |
29880678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 3565105 - 3565026
Alignment:
| Q |
178 |
aatgacgggttatctagtaaacgacttatagggtatggaacgagattgtaatccctctcagattcatcgtcaataccata |
257 |
Q |
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| T |
3565105 |
aatgacgggttatcgagtaaacgaggtataggatatggaatgatactgtaatcaatctcagcttcatcgtcactaccata |
3565026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 3625224 - 3625181
Alignment:
| Q |
71 |
cagccaaacagatcaatccattgcatgaaccaattatacgagag |
114 |
Q |
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| T |
3625224 |
cagccaaacatatcaatccattgcaggaaccaactatacgagag |
3625181 |
T |
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